Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8498 93.3 3e-14 >seq8498 Length=279317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 42887 CACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATG 42946 |||| ||||| ||||| | ||| | |||| ||||||||| | ||||| || ||||| | Sbjct 98934 CACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGG 98875 Query 42947 TACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACAC 43006 ||||| | || |||| ||| ||||| ||||| |||| || || || || | || | | Sbjct 98874 TACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTC 98815 Query 43007 CTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTA 43066 |||| || || |||| | || || | | | ||| || | ||||| || | Sbjct 98814 CTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGA 98755 Query 43067 CCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || || || || || || || ||||||||||| ||||| || Sbjct 98754 GAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381290464139508