Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5291 141 1e-28 seq6424 129 8e-25 seq11817 107 3e-18 >seq5291 Length=463539 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | | Sbjct 20686 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 20745 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 20746 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 20805 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 20806 CTGTTTCTTATACCAT 20821 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 32916 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 32975 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 32976 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 33035 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 33036 TCCAGGTAAATAGC 33049 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || || || || | | | ||| || ||||| || || || || ||||||| Sbjct 26479 CATAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 26538 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || || || || ||||| || | Sbjct 26539 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 26598 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || ||||| ||||| || | || | Sbjct 26599 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGGCGATGGC 26658 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 26659 GTTTATTCGA 26668 >seq6424 Length=433988 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649 Query 42207 C 42207 | Sbjct 17648 C 17648 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| ||||||| ||| |||||| Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831 >seq11817 Length=981421 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | || |||||||| |||||||||||||| || || | || || Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| |||||||| || || |||||||| Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 476815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670996364799760