Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8498 102 6e-17 seq10972 95.1 9e-15 seq11172 89.7 4e-13 >seq8498 Length=279317 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||| |||||| ||||| || ||||| |||||||| || | | | | Sbjct 98927 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCC 98868 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||||||| | |||| | ||| ||||| ||||||||||| || Sbjct 98867 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 98808 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||||||| ||||||| ||||| ||| || || | || || Sbjct 98807 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 98748 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || ||||| || || |||||||| ||||| || Sbjct 98747 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709 >seq10972 Length=1569106 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/238 (69%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 1317893 CCACCACGAATTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1317834 Query 15197 AGAATTCT------CG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGT 15248 | | | | || | ||||| | ||| |||||||| | |||| | ||| |||| Sbjct 1317833 AAAGTACGTCCATACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGT 1317774 Query 15249 CGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT 15308 | ||||||||||| || || || ||| ||||||| ||||||| ||||| Sbjct 1317773 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGG 1317714 Query 15309 TTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || | |||||||| || || ||||| || || || ||||| ||||| || Sbjct 1317713 GTTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 1317656 >seq11172 Length=1040880 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||| |||||| ||||| || ||||| |||||||| || | | | | | Sbjct 4334 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 4393 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| ||||||| | |||| | ||| ||||| ||||||||||| || Sbjct 4394 ATCTTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 4453 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||||||| ||||||| || || || || || | || || Sbjct 4454 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGAT 4513 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || ||||| || || || ||||| ||||| || Sbjct 4514 GGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCATCTT 4552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362104046231466