Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8498 163 7e-35 seq11172 154 3e-32 seq10972 154 3e-32 seq1447 141 2e-28 seq15871 134 3e-26 seq13361 129 1e-24 seq16361 123 6e-23 seq11817 111 4e-19 seq4335 104 5e-17 seq780 95.1 3e-14 seq11295 87.8 4e-12 >seq8498 Length=279317 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | || | || ||||| Sbjct 98920 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCC 98861 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 98860 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 98801 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 98800 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 98741 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || ||||| |||||||| ||| Sbjct 98740 CCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 98708 >seq11172 Length=1040880 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 4341 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 4400 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||| ||| || || || || || |||||||| |||||||| |||||||| Sbjct 4401 AGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 4460 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || || || ||||| || || || ||||| Sbjct 4461 ATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGTCTTC 4520 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || || |||||||| ||| Sbjct 4521 CCAGTCAGGGTCTTCACGAAAATCTGCATCTTG 4553 >seq10972 Length=1569106 Score = 154 bits (170), Expect = 3e-32 Identities = 167/221 (76%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTC-----TAC--- 104402 |||||||| | || || || || ||||| || |||||||| | ||| | ||| Sbjct 1317875 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATACGTC 1317816 Query 104403 CGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTT 104462 | ||||| ||||| || |||||||| || || || || || |||||||| |||||||| | Sbjct 1317815 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 1317756 Query 104463 TATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAA 104522 ||||||| ||||| || ||||||||||||| ||||| ||||| ||||| || |||| Sbjct 1317755 TATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTAA 1317696 Query 104523 TAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | ||||| || || || || || || || |||||||| ||| Sbjct 1317695 TGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 1317655 >seq1447 Length=2301054 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || | || || ||||| || |||||||| | ||| || ||||| Sbjct 2079825 ACTAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 2079884 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || | || || || |||||||| |||||||| |||||||| Sbjct 2079885 AGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCCTGG 2079944 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| |||| || || || ||||| Sbjct 2079945 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTC 2080004 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || || || || || |||||||| ||| Sbjct 2080005 CCCATCAGGGTCTTCACGAAAATCTGCATCTTG 2080037 >seq15871 Length=707613 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| || || | || ||||| || ||||| || Sbjct 26720 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGTTTCCCC 26779 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || || || ||||| || || ||||| || || Sbjct 26780 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 26839 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||||||||| || || Sbjct 26840 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGGGTC 26899 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 26900 TTCACGAAGATCTGCAT 26916 >seq13361 Length=1652743 Score = 129 bits (142), Expect = 1e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| | |||||||| | ||| | || ||||| ||||| || ||| Sbjct 1224027 GTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCA 1224086 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || || | |||||||| |||||||| |||||||| ||||| || ||| Sbjct 1224087 GCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1224146 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| | |||| || | ||||| || || || ||||| || | || || Sbjct 1224147 ACATTTTCTATGCTATCCGGGGGCTTGACCTCAAGAGTGATGGTCTTCCCCATCAGGGTC 1224206 Query 104543 TTTACAAATATCTGCA 104558 || || || ||||||| Sbjct 1224207 TTCACGAAAATCTGCA 1224222 >seq16361 Length=1029486 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | | || || |||||||| || || ||||| | ||| || ||||| Sbjct 460846 ACTAGATGAAGAATGGACTCCTTCTGAATGTTGTACTCAGACAAAGTATGTCCATCTTCC 460905 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| | |||||||| || || || ||||| ||||||| |||| || |||||||| Sbjct 460906 AGTTGCCTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCTCTCCTTATCCTGG 460965 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| || || ||||| || || || | ||| Sbjct 460966 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTGATGGCCTTC 461025 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCA 104558 | | || || || ||||| ||||||| Sbjct 461026 TCCATCAGGGTCTTCACAAAAATCTGCA 461053 >seq11817 Length=981421 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 476830 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCT 476771 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || | Sbjct 476770 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTC 476711 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 476710 ATCAGCAGAGATGAAG 476695 >seq4335 Length=2333085 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||| ||| | || | | ||||| |||| |||||| Sbjct 2242510 GTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATCTATCTTCCAGTTTCTTTCCA 2242451 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||| || || || || || |||||||| | |||||| |||||||| ||||| || ||| Sbjct 2242450 GCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATCCTGGATCTTGGCCTTT 2242391 Query 104483 ACATTTTCTACGGTATC 104499 |||||||||| ||||| Sbjct 2242390 ACATTTTCTATCGTATC 2242374 >seq780 Length=2502144 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 1907449 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1907390 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | || ||||| || ||| Sbjct 1907389 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGCACCATGTTCACCTTG 1907330 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| || |||||||||| Sbjct 1907329 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 1907295 >seq11295 Length=36635 Score = 87.8 bits (96), Expect = 4e-12 Identities = 198/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 65708 TATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCCTTTACATAT 65767 ||||||||| | ||| |||| | |||| || || | || ||| || || | Sbjct 33586 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 33645 Query 65768 ATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGA 65827 | |||| ||| || || |||||||| | | | |||||||| |||||| | ||| Sbjct 33646 TTCAAACGTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTAGAATCTTC 33705 Query 65828 ATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGC 65887 |||| | |||||||| ||||||||||| |||| || || || ||||| || ||||| Sbjct 33706 ATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 33765 Query 65888 TATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAA-TTCTT 65946 | ||| ||||| | || ||||| | ||| | ||||| | |||| ||| Sbjct 33766 CACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGT-TTTCCCAAGCACTT 33824 Query 65947 TGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGC 66001 | ||||| ||| |||| | ||||| || || || || || || || || || || Sbjct 33825 TCTCCATCGGTGGTACTATGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 33879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151147227476408