Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq8498 163 7e-35
seq11172 154 3e-32
seq10972 154 3e-32
seq1447 141 2e-28
seq15871 134 3e-26
seq13361 129 1e-24
seq16361 123 6e-23
seq11817 111 4e-19
seq4335 104 5e-17
seq780 95.1 3e-14
seq11295 87.8 4e-12
>seq8498
Length=279317
Score = 163 bits (180), Expect = 7e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || ||||| || |||||||| | || | || |||||
Sbjct 98920 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCC 98861
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || || || || || |||||||| |||||||| ||||||||
Sbjct 98860 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 98801
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 98800 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 98741
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || || ||||| |||||||| |||
Sbjct 98740 CCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 98708
>seq11172
Length=1040880
Score = 154 bits (170), Expect = 3e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || ||||| || |||||||| | ||| | || |||||
Sbjct 4341 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 4400
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||| ||| || || || || || |||||||| |||||||| ||||||||
Sbjct 4401 AGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 4460
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| || || || || ||||| || || || |||||
Sbjct 4461 ATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGTCTTC 4520
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || || || |||||||| |||
Sbjct 4521 CCAGTCAGGGTCTTCACGAAAATCTGCATCTTG 4553
>seq10972
Length=1569106
Score = 154 bits (170), Expect = 3e-32
Identities = 167/221 (76%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTC-----TAC--- 104402
|||||||| | || || || || ||||| || |||||||| | ||| | |||
Sbjct 1317875 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATACGTC 1317816
Query 104403 CGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTT 104462
| ||||| ||||| || |||||||| || || || || || |||||||| |||||||| |
Sbjct 1317815 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 1317756
Query 104463 TATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAA 104522
||||||| ||||| || ||||||||||||| ||||| ||||| ||||| || ||||
Sbjct 1317755 TATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTAA 1317696
Query 104523 TAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
| ||||| || || || || || || || |||||||| |||
Sbjct 1317695 TGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTTG 1317655
>seq1447
Length=2301054
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || | || || ||||| || |||||||| | ||| || |||||
Sbjct 2079825 ACTAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 2079884
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || | || || || |||||||| |||||||| ||||||||
Sbjct 2079885 AGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATCCTGG 2079944
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| ||||| |||| || || || |||||
Sbjct 2079945 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGTCTTC 2080004
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| | || || || || || |||||||| |||
Sbjct 2080005 CCCATCAGGGTCTTCACGAAAATCTGCATCTTG 2080037
>seq15871
Length=707613
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || |||||||| || || | || ||||| || ||||| ||
Sbjct 26720 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGTTTCCCC 26779
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||| || || || || || || ||||| || || ||||| || ||
Sbjct 26780 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 26839
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || || ||||| || || || ||||||||||| || ||
Sbjct 26840 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGGGTC 26899
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 26900 TTCACGAAGATCTGCAT 26916
>seq13361
Length=1652743
Score = 129 bits (142), Expect = 1e-24
Identities = 146/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || ||||| | |||||||| | ||| | || ||||| ||||| || |||
Sbjct 1224027 GTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCA 1224086
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || || || | |||||||| |||||||| |||||||| ||||| || |||
Sbjct 1224087 GCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 1224146
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||||| | |||| || | ||||| || || || ||||| || | || ||
Sbjct 1224147 ACATTTTCTATGCTATCCGGGGGCTTGACCTCAAGAGTGATGGTCTTCCCCATCAGGGTC 1224206
Query 104543 TTTACAAATATCTGCA 104558
|| || || |||||||
Sbjct 1224207 TTCACGAAAATCTGCA 1224222
>seq16361
Length=1029486
Score = 123 bits (136), Expect = 6e-23
Identities = 152/208 (73%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | | || || |||||||| || || ||||| | ||| || |||||
Sbjct 460846 ACTAGATGAAGAATGGACTCCTTCTGAATGTTGTACTCAGACAAAGTATGTCCATCTTCC 460905
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| | |||||||| || || || ||||| ||||||| |||| || ||||||||
Sbjct 460906 AGTTGCCTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCTCTCCTTATCCTGG 460965
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| || || ||||| || || || | |||
Sbjct 460966 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCGAGAGTGATGGCCTTC 461025
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCA 104558
| | || || || ||||| |||||||
Sbjct 461026 TCCATCAGGGTCTTCACAAAAATCTGCA 461053
>seq11817
Length=981421
Score = 111 bits (122), Expect = 4e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| |||||| | || || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct 476830 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCT 476771
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| | ||||||||||| || ||||| ||| | ||||| || || || |
Sbjct 476770 GCTATATTCTGGCTAAAGAAAAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTC 476711
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 476710 ATCAGCAGAGATGAAG 476695
>seq4335
Length=2333085
Score = 104 bits (114), Expect = 5e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || |||| ||| | || | | ||||| |||| ||||||
Sbjct 2242510 GTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATCTATCTTCCAGTTTCTTTCCA 2242451
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||| || || || || || |||||||| | |||||| |||||||| ||||| || |||
Sbjct 2242450 GCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATCCTGGATCTTGGCCTTT 2242391
Query 104483 ACATTTTCTACGGTATC 104499
|||||||||| |||||
Sbjct 2242390 ACATTTTCTATCGTATC 2242374
>seq780
Length=2502144
Score = 95.1 bits (104), Expect = 3e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | ||| ||||||||||| || || | || || | || || ||||| |
Sbjct 1907449 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1907390
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| || ||| | |||||| || || |||||||| | || ||||| || |||
Sbjct 1907389 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGCACCATGTTCACCTTG 1907330
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
| ||||| || ||||| ||| || ||||||||||
Sbjct 1907329 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 1907295
>seq11295
Length=36635
Score = 87.8 bits (96), Expect = 4e-12
Identities = 198/295 (67%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 65708 TATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCCTTTACATAT 65767
||||||||| | ||| |||| | |||| || || | || ||| || || |
Sbjct 33586 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 33645
Query 65768 ATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGA 65827
| |||| ||| || || |||||||| | | | |||||||| |||||| | |||
Sbjct 33646 TTCAAACGTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTAGAATCTTC 33705
Query 65828 ATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGC 65887
|||| | |||||||| ||||||||||| |||| || || || ||||| || |||||
Sbjct 33706 ATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 33765
Query 65888 TATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAA-TTCTT 65946
| ||| ||||| | || ||||| | ||| | ||||| | |||| |||
Sbjct 33766 CACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGT-TTTCCCAAGCACTT 33824
Query 65947 TGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGC 66001
| ||||| ||| |||| | ||||| || || || || || || || || || ||
Sbjct 33825 TCTCCATCGGTGGTACTATGTAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 33879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151147227476408
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