Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq8308 140 4e-28 >seq8308 Length=311946 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || | Sbjct 88330 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 88271 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | || | ||| |||||||||||||| ||||| |||| Sbjct 88270 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGA 88211 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | || |||||||| |||| || Sbjct 88210 AGCTGAAGACCCTCCGGCTGCG 88189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| | || | | || || || |||| ||| |||||||||||||||||||| | || Sbjct 93198 AGGGTTTCCAGAGTTGCCAAACCTTGTCGGAAGTGATCCAGTTTTACCTGGAGAAGGTGG 93257 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 | ||||||||||| || | | || | ||| ||||||||||| || ||||| |||| Sbjct 93258 TTCCACAGGCTGAGAACCGTGGGCCTGAGATCAAGGAGCACGTGAATTCGCTGGGGGAGA 93317 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | ||| ||||||| |||| || Sbjct 93318 AGCTAGAGACCCTGTGGCTGCG 93339 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | || ||||| |||||||||||||| |||||||| || || ||||| | Sbjct 86009 AGCTCCAAGAGAGGGGTGTCTATAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 85950 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 85949 TAGAAACCTACATGACAATGAAGAT 85925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547262704021760