Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq9234 170 3e-37 seq9072 100 4e-16 >seq9234 Length=186048 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| ||||||| ||||| |||||| Sbjct 9898 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTCAGCACATCACACACT 9957 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 9958 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 10017 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | | | ||| || || | || || |||||||| | Sbjct 10018 ACCTCCTGGCCCACAGCAAACTTTAAGTGTTCAGGAACATGAGGTGGGTAGATCATTTCG 10077 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 10078 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 10126 Score = 150 bits (166), Expect = 3e-31 Identities = 218/305 (71%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || ||||| ||||| ||||| | |||| |||||||| || | Sbjct 8217 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 8276 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| ||| ||| || || ||||| || || ||||| || |||||||| Sbjct 8277 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 8336 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851 | || || || || || |||| || ||||| ||||| || || || || |||| | Sbjct 8337 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGCGCTCC-AGCTTCT 8395 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| |||| || |||||||||| ||||| ||||| || |||| | ||| ||| Sbjct 8396 ACCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCGGGATAC 8455 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | ||||| || || ||||||||||| || || | || ||||| |||||||| ||| Sbjct 8456 AGCTCCATGGCATCTATGTCTCCGTAGAGTGCTTCTAACTCTGCAGCCATTTCCTTCTCT 8515 Query 8972 CCTGT 8976 ||||| Sbjct 8516 CCTGT 8520 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 10924 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 10983 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 10984 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 11043 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | || | ||||| ||||| |||||| Sbjct 11044 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 11082 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || || ||||| ||| || | | Sbjct 11744 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCGGGCACAGGAGGAAGAGCTCTGGTG 11803 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || ||||| | | || || || Sbjct 11804 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTG 11863 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 11864 GGCGGACTGTCAATCAAATGTGATCTCGCTGAA 11896 >seq9072 Length=1341007 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || ||||| | |||||||| | || || |||||| |||| Sbjct 729544 AAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTC 729485 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || |||||||| ||||| |||| || | || ||||| || |||||| Sbjct 729484 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCTCCCATTTCTATCATACTCTCCCCAAAGATG 729425 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | | ||| || ||| || | | | || | ||| || |||| ||| ||||||||| Sbjct 729424 GAGCTTGGATGGCACTTCTCAAGAAGCAGCCCTGGGTAGAATTCCAAAGCATCGATGTCT 729365 Query 8933 CCGTAAAG 8940 || || || Sbjct 729364 CCATATAG 729357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708374008209440