Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq9234 170 3e-37
seq9072 100 4e-16
>seq9234
Length=186048
Score = 170 bits (188), Expect = 3e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || || | |||||||||||| ||| ||||||| ||||| ||||||
Sbjct 9898 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTCAGCACATCACACACT 9957
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| ||||| || || || |||||||| |||||||||||||| |||||
Sbjct 9958 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 10017
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | | | ||| || || | || || |||||||| |
Sbjct 10018 ACCTCCTGGCCCACAGCAAACTTTAAGTGTTCAGGAACATGAGGTGGGTAGATCATTTCG 10077
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||| || || | ||| ||||
Sbjct 10078 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 10126
Score = 150 bits (166), Expect = 3e-31
Identities = 218/305 (71%), Gaps = 2/305 (1%)
Strand=Plus/Plus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| | || || ||||| ||||| ||||| | |||| |||||||| || |
Sbjct 8217 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 8276
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792
||| | |||| ||| ||| || || ||||| || || ||||| || ||||||||
Sbjct 8277 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 8336
Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851
| || || || || || |||| || ||||| ||||| || || || || |||| |
Sbjct 8337 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGCGCTCC-AGCTTCT 8395
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| ||| |||| || |||||||||| ||||| ||||| || |||| | ||| |||
Sbjct 8396 ACCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCGGGATAC 8455
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971
| ||||| || || ||||||||||| || || | || ||||| |||||||| |||
Sbjct 8456 AGCTCCATGGCATCTATGTCTCCGTAGAGTGCTTCTAACTCTGCAGCCATTTCCTTCTCT 8515
Query 8972 CCTGT 8976
|||||
Sbjct 8516 CCTGT 8520
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 10924 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 10983
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || ||||| ||||||||
Sbjct 10984 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 11043
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186
||| |||| | || | ||||| ||||| ||||||
Sbjct 11044 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 11082
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || || | || || ||||| ||| || | |
Sbjct 11744 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCGGGCACAGGAGGAAGAGCTCTGGTG 11803
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||| || || || || |||||||||||| || ||||| | | || || ||
Sbjct 11804 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTATAAGTG 11863
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || ||||||||||||| ||||| |||||
Sbjct 11864 GGCGGACTGTCAATCAAATGTGATCTCGCTGAA 11896
>seq9072
Length=1341007
Score = 100 bits (110), Expect = 4e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| || || || || ||||| | |||||||| | || || |||||| ||||
Sbjct 729544 AAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTC 729485
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| || |||||||| ||||| |||| || | || ||||| || ||||||
Sbjct 729484 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCTCCCATTTCTATCATACTCTCCCCAAAGATG 729425
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| | | ||| || ||| || | | | || | ||| || |||| ||| |||||||||
Sbjct 729424 GAGCTTGGATGGCACTTCTCAAGAAGCAGCCCTGGGTAGAATTCCAAAGCATCGATGTCT 729365
Query 8933 CCGTAAAG 8940
|| || ||
Sbjct 729364 CCATATAG 729357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708374008209440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |