Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq15871 127 2e-24 seq11295 120 3e-22 seq7844 109 5e-19 seq6202 107 2e-18 >seq15871 Length=707613 Score = 127 bits (140), Expect = 2e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || ||||| ||||| |||| |||||||||| ||| || || || || | || Sbjct 26679 AACTTAAAACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGT 26738 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || || || ||| ||||||||||| || ||||||| || || |||| Sbjct 26739 TGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCT 26798 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | ||||| || || || |||||||| | || || |||||||| ||| |||||| Sbjct 26799 GGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAC 26858 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 26859 TGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 27146 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 27205 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| || || ||||| ||||| || Sbjct 27206 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 27265 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||||| ||| |||||| | | || || Sbjct 27266 ATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27325 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| ||||| || || || |||||||||||||| Sbjct 27326 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 27372 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 26918 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 26977 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| || || ||||| ||||| || Sbjct 26978 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 27037 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || || |||||||| ||| |||||| | | || || Sbjct 27038 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 27097 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 27098 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 27144 >seq11295 Length=36635 Score = 120 bits (132), Expect = 3e-22 Identities = 225/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Plus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || |||| || | ||| |||||| ||||| ||||||||||||||| || |||| || | Sbjct 33576 GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCAC 33635 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 ||| || | ||| || | || | || || || || || || || ||||| | Sbjct 33636 CCTTTTTGACTTCAAACGTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTC 33695 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 || | ||||| ||| | || || || ||||| ||||| ||| | |||||||||| | Sbjct 33696 TAGAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAG 33755 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | ||||| || ||||| || ||| | ||||| | | ||||| ||||| Sbjct 33756 AACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCC 33815 Query 43849 CGAG-GCTGTAGCCTTTG--GGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACC 43905 | || || | || | | ||| ||||| |||| | ||| |||||||| ||||| | Sbjct 33816 CAAGCACTTTCTCCATCGGTGGTACTATG---TAATCATAGGCACTGTACAGGTCGTAGC 33872 Query 43906 CGGCGGAGAGCTTGGATCCTTTGGTGGG 43933 | |||| |||| ||| || |||||||| Sbjct 33873 CCGCGGCGAGCGCGGACCCCTTGGTGGG 33900 >seq7844 Length=401405 Score = 109 bits (120), Expect = 5e-19 Identities = 170/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 |||| | || ||| || || |||| || | |||| ||||| || || || || || Sbjct 263378 TTAAGAATTAACAG-CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGG 263320 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | ||| ||||| | |||| | ||| |||||||| || ||| ||||||| | || Sbjct 263319 ATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTC 263260 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || |||||||| ||||| || || | || || ||||| ||| ||| ||| Sbjct 263259 TGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTG 263200 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | | || || || | |||||||| || || || || || ||||| ||||||||| Sbjct 263199 TCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGC 263140 Query 95006 AT 95007 || Sbjct 263139 AT 263138 >seq6202 Length=441370 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 3287 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3228 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || |||||| Sbjct 3227 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 3168 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 3167 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3108 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 3107 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3061 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 3515 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3456 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || |||||| Sbjct 3455 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 3396 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 3395 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3336 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 3335 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3289 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 3743 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3684 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || |||||| Sbjct 3683 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 3624 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 3623 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3564 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 3563 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3517 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 3971 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3912 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || |||||| Sbjct 3911 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 3852 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 3851 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 3792 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 3791 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3745 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 4199 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 4140 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || |||||| Sbjct 4139 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4080 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 4079 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 4020 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 4019 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3973 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 4427 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 4368 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || ||| ||||||| | || ||||| || |||||| Sbjct 4367 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4308 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 4307 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 4248 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 4247 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4201 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 |||| | || ||| || || |||| || | |||| ||||| || || || || || Sbjct 4669 TTAAGAATTAACAG-CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGG 4611 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | ||| ||||| | |||| | ||| |||||||| || ||| ||||||| | || Sbjct 4610 ATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTC 4551 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || ||||| ||||| || || | || || ||||| ||| ||| ||| Sbjct 4550 TGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTG 4491 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | | || || || | |||||||| || || || || || ||||| ||||||||| Sbjct 4490 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGC 4431 Query 95006 AT 95007 || Sbjct 4430 AT 4429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448195792425360