Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq8568 141 1e-28 seq11817 96.9 4e-15 seq6424 89.7 5e-13 >seq8568 Length=272455 Score = 141 bits (156), Expect = 1e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || |||||||||| | ||||||| ||||||| ||||||||| ||||| | Sbjct 249731 AGCTCCTCCTCCGTTTCAAACTGAACAAGAACAGCTCCCAGTGAAGTACAGAATGTCTGA 249790 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||| Sbjct 249791 CTGAATGTCCAATTCTTTGAGTCTTCCGAAAAATAAAAACACTTATACCCAAATCCAATC 249850 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||||| ||||| Sbjct 249851 CATCCTTTTGGGCAAGCGACATA 249873 Score = 132 bits (146), Expect = 5e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130412 TGAATTATTAGAAGGTATATAGATATTAGTATATGTTTTACTACAAATCCATTTTCTATT 130471 |||| || | ||||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct 247733 TGAAGTACTTAAAGGTATGAAGACATTACTATTTGTCTTGCTGCAAATCCATTTTCTATT 247792 Query 130472 CGCATAAACTCTGGAGCTACTAATTCTGATGTCATTAAGATATGCACATTCTCCAGTTCC 130531 || || || ||||| ||||||||||| |||||||| || || |||||||| |||||||| Sbjct 247793 TGCGTATACCCTGGAACTACTAATTCTAATGTCATTCAGGTAGGCACATTCCCCAGTTCC 247852 Query 130532 TGTAATAACAAAT 130544 ||| || |||||| Sbjct 247853 TGTGATGACAAAT 247865 Score = 120 bits (132), Expect = 3e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724 ||||||| | | ||||| ||| | |||||||||||||||| | | ||||||||| Sbjct 9400 GTTTCAAACTGAGCAAGAACAGCTTCACATGAAGTACAAAATGTCTGACTGAATGTCCAA 9341 Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784 || ||||| ||||||||||| ||||| || ||| | ||||||||||||||||| |||||| Sbjct 9340 TTCTTTGAGTCTTCAGAAAAATAAAAACACTTACACCCAAATCCAATCCATCCTTTTGGG 9281 Query 130785 CAAGTAACATA 130795 || | ||||| Sbjct 9280 CAGGGGACATA 9270 Score = 105 bits (116), Expect = 7e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610 ||||| || || || |||| ||| ||||||||||||||||| ||||||||| |||| || Sbjct 249029 TTATATTTAGAGTTGTCTGTCCACTTCCAAGGATGATTTGATGATTCTCTGCTAAGGCCA 249088 Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTTTTTAAAAAATT 130651 |||||||| || ||||| ||||| |||||||| | ||| || Sbjct 249089 ATCCAATGGTCGGAAGAGTCTTTGTATCTTTTCAGAAAGTT 249129 >seq11817 Length=981421 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 468495 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 468554 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 468555 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 468614 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 468615 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 468645 >seq6424 Length=433988 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| ||||| || | || ||||| | ||||| || || Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| |||||||||||||| | || |||||||| ||||| || || || ||||| || Sbjct 17706 AGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 17647 Query 21620 ACTAATCGTTCACC 21633 || | ||||| || Sbjct 17646 ACCACACGTTCTCC 17633 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 19308 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 19249 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 19248 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 19209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531787598212240