Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq8568 141 1e-28
seq11817 96.9 4e-15
seq6424 89.7 5e-13
>seq8568
Length=272455
Score = 141 bits (156), Expect = 1e-28
Identities = 117/143 (82%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
|| || || |||||||||| | ||||||| ||||||| ||||||||| ||||| |
Sbjct 249731 AGCTCCTCCTCCGTTTCAAACTGAACAAGAACAGCTCCCAGTGAAGTACAGAATGTCTGA 249790
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| ||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||||||||||
Sbjct 249791 CTGAATGTCCAATTCTTTGAGTCTTCCGAAAAATAAAAACACTTATACCCAAATCCAATC 249850
Query 130773 CATCCCTTTGGGCAAGTAACATA 130795
||||| |||||||||| |||||
Sbjct 249851 CATCCTTTTGGGCAAGCGACATA 249873
Score = 132 bits (146), Expect = 5e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 130412 TGAATTATTAGAAGGTATATAGATATTAGTATATGTTTTACTACAAATCCATTTTCTATT 130471
|||| || | ||||||| ||| |||| ||| ||| || || |||||||||||||||||
Sbjct 247733 TGAAGTACTTAAAGGTATGAAGACATTACTATTTGTCTTGCTGCAAATCCATTTTCTATT 247792
Query 130472 CGCATAAACTCTGGAGCTACTAATTCTGATGTCATTAAGATATGCACATTCTCCAGTTCC 130531
|| || || ||||| ||||||||||| |||||||| || || |||||||| ||||||||
Sbjct 247793 TGCGTATACCCTGGAACTACTAATTCTAATGTCATTCAGGTAGGCACATTCCCCAGTTCC 247852
Query 130532 TGTAATAACAAAT 130544
||| || ||||||
Sbjct 247853 TGTGATGACAAAT 247865
Score = 120 bits (132), Expect = 3e-22
Identities = 105/131 (80%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 130665 GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAA 130724
||||||| | | ||||| ||| | |||||||||||||||| | | |||||||||
Sbjct 9400 GTTTCAAACTGAGCAAGAACAGCTTCACATGAAGTACAAAATGTCTGACTGAATGTCCAA 9341
Query 130725 TTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGG 130784
|| ||||| ||||||||||| ||||| || ||| | ||||||||||||||||| ||||||
Sbjct 9340 TTCTTTGAGTCTTCAGAAAAATAAAAACACTTACACCCAAATCCAATCCATCCTTTTGGG 9281
Query 130785 CAAGTAACATA 130795
|| | |||||
Sbjct 9280 CAGGGGACATA 9270
Score = 105 bits (116), Expect = 7e-18
Identities = 84/101 (83%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610
||||| || || || |||| ||| ||||||||||||||||| ||||||||| |||| ||
Sbjct 249029 TTATATTTAGAGTTGTCTGTCCACTTCCAAGGATGATTTGATGATTCTCTGCTAAGGCCA 249088
Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTTTTTAAAAAATT 130651
|||||||| || ||||| ||||| |||||||| | ||| ||
Sbjct 249089 ATCCAATGGTCGGAAGAGTCTTTGTATCTTTTCAGAAAGTT 249129
>seq11817
Length=981421
Score = 96.9 bits (106), Expect = 4e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | |
Sbjct 468495 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 468554
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || || || || || || ||
Sbjct 468555 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 468614
Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276
||||||||||||| |||||||| | || |||
Sbjct 468615 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 468645
>seq6424
Length=433988
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | |||||| ||||| || | || ||||| | ||||| || ||
Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| |||||||||||||| | || |||||||| ||||| || || || ||||| ||
Sbjct 17706 AGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 17647
Query 21620 ACTAATCGTTCACC 21633
|| | ||||| ||
Sbjct 17646 ACCACACGTTCTCC 17633
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227
||||||| | |||||| | ||||| || | ||||| || || || || || ||||| |
Sbjct 19308 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 19249
Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267
| |||| ||| ||| ||||||||| ||||||||||||||
Sbjct 19248 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 19209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531787598212240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |