Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq15871 107 2e-18
>seq15871
Length=707613
Score = 107 bits (118), Expect = 2e-18
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| |||||||| || || ||||||||||| |
Sbjct 26917 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 26976
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | || |||| ||||| |||||| | || | || ||| ||||| ||
Sbjct 26977 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGG 27036
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||||||||| || || || ||| || | | | ||||| | |||||||
Sbjct 27037 GATGCCCTCTTTGTCTTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCC 27094
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||||||| || |||||||| || || || || ||||||||
Sbjct 27095 ACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 27144
Score = 104 bits (114), Expect = 2e-17
Identities = 153/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| |||||||| || || ||||||||||| | || ||| | ||
Sbjct 26704 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 26763
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| ||||| |||||| | || | || ||| ||||| || | ||||||||||||
Sbjct 26764 TTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTC 26823
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | ||||| | ||||||| |||| |||||||
Sbjct 26824 TTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 26881
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||| || || || || ||||||||
Sbjct 26882 GTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| |||| || | || |||| ||||| |||||||| || || ||||||||||| |
Sbjct 27145 CCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 27204
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | || |||| ||||| |||||| | || | || ||| ||||| ||
Sbjct 27205 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGG 27264
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| ||| ||||| || || | | ||| || | | | ||||| | |||||||
Sbjct 27265 GATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 27324
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||| ||||||||||| || || || || || ||||| |||||||||
Sbjct 27325 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 27373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405003942467740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |