Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8814 127 1e-24 seq3947 127 1e-24 seq10372 104 2e-17 seq8498 102 5e-17 seq10972 100 2e-16 seq1758 100 2e-16 seq11205 98.7 7e-16 seq10694 98.7 7e-16 seq8329 98.7 7e-16 seq1447 96.9 2e-15 seq9161 95.1 8e-15 seq792 95.1 8e-15 seq11172 93.3 3e-14 seq8307 89.7 3e-13 seq7269 89.7 3e-13 seq9393 86.0 4e-12 seq13872 84.2 1e-11 >seq8814 Length=420934 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 333548 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 333607 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 333608 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 333642 >seq3947 Length=496843 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 90212 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 90271 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 90272 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 90306 >seq10372 Length=86107 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 55021 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 55080 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 55081 GCCGGTATTTAGCCTTA 55097 >seq8498 Length=279317 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| |||||||| |||| | || Sbjct 98924 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATC 98865 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| || || Sbjct 98864 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 98805 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 98804 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 98745 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| ||||| || |||||||| || Sbjct 98744 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709 >seq10972 Length=1569106 Score = 100 bits (110), Expect = 2e-16 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAA--------ACA 38156 |||||| | |||||||||| |||||||||||| ||||| ||||||||| | | Sbjct 1317879 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATA 1317820 Query 38157 CGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCT 38216 ||| | || || | ||| || || ||||| || || | ||| || || | || | ||| Sbjct 1317819 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 1317760 Query 38217 TCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAAT 38276 || || ||| || || ||| ||||| | | ||||| ||| || || | Sbjct 1317759 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 1317700 Query 38277 GTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || || ||||||| ||| |||||||| |||||||| || Sbjct 1317699 GTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 1317656 >seq1758 Length=579153 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||| |||||||||||||||||||| | |||||||| ||| | || |||||| | Sbjct 541115 AAGCCCATTCCCTTGGCTGTGGTTTCGATGGATAGTAGGTAGAGACAGTGGGAATCTCTT 541056 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||| ||||||||||||||||| Sbjct 541055 TGATCCATTCATGCGAGTCACTAATTAGATGAC 541023 >seq11205 Length=1030395 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 969512 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 969453 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 969452 GCCGGTATTTAGCCTTA 969436 >seq10694 Length=3147259 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| ||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 1204660 CTCTCTCTTCGAAGTTCTTTTCAACTTTCCCTAATGGTACTTGTTGACTATCGGTCTCGT 1204719 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1204720 GCTGGTATTTAGCCTTA 1204736 >seq8329 Length=305342 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | Sbjct 280598 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTGGT 280657 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 280658 GCCGGTATTTAGCCTTA 280674 >seq1447 Length=2301054 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| | || | || Sbjct 2079821 CAACACTAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 2079880 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | ||| || || | || | ||||| || || Sbjct 2079881 TTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATC 2079940 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| | | || || || Sbjct 2079941 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGT 2080000 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| ||| ||| |||||||| |||||||| || Sbjct 2080001 CTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 2080036 >seq9161 Length=1339885 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 853225 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCTT 853166 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 853165 GCCGGTATTTAGCCTTA 853149 >seq792 Length=614699 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| | Sbjct 498270 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTTGT 498211 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 498210 GCCGGTATTTAGCCTTA 498194 >seq11172 Length=1040880 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| || | | || Sbjct 4337 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 4396 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || | ||| || || | ||| || || | || | ||||| || || Sbjct 4397 TTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 4456 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || ||| || || || | || || || Sbjct 4457 CTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGT 4516 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||| ||| |||||||| |||||||| || Sbjct 4517 CTTCCCAGTCAGGGTCTTCACGAAAATCTGCATCTT 4552 >seq8307 Length=310613 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||| |||| |||||||||||| ||||| |||| | Sbjct 46112 CTCTCTCTTCAAAGTTCTTTTCAACTTCCCCTTACGGTACTTGTTGACTATCAGTCTTGT 46171 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 46172 GCCGGTATTTAGCCTTA 46188 >seq7269 Length=734764 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 362726 CTCTCTCTTCGAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCAT 362667 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| || Sbjct 362666 GCCGGTATTTAGCCGTA 362650 >seq9393 Length=182440 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||| |||||| |||| ||||||| || |||||||||||| |||| ||||||| Sbjct 154714 CTCTCTCTTTAAAGTTTTTTTTAACTTTCTCTTACGGTACTTGTTGACTATTGGTCTCGT 154773 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 154774 GCCAGTATTTAGCCTTA 154790 >seq13872 Length=823964 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 |||||||||||||||||||||||| |||||||||||| | | |||||||| | | ||| Sbjct 22059 TCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACCACCGGTCTCGTGCTGGTAT 22118 Query 20015 TTAGCCTTA 20023 ||||||||| Sbjct 22119 TTAGCCTTA 22127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334877696990606