Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq7844 120 3e-22 seq6202 114 1e-20 seq15871 113 4e-20 >seq7844 Length=401405 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 262909 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 262968 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 262969 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 263028 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 263029 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 263088 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 263089 CATCCAGAAAGAGTCGACCCTGCA 263112 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 263138 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 263197 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 263198 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 263257 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 263258 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 263317 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 263318 ATCCAGAAAGAGTCGACCCTGCA 263340 >seq6202 Length=441370 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 3061 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3120 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 3121 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3180 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 3181 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3240 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 3241 ATCCAGAAAGAGTCGACCCTGCA 3263 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 3289 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3348 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 3349 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3408 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 3409 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3468 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 3469 ATCCAGAAAGAGTCGACCCTGCA 3491 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 3517 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3576 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 3577 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3636 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 3637 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3696 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 3697 ATCCAGAAAGAGTCGACCCTGCA 3719 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 3745 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3804 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 3805 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3864 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 3865 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3924 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 3925 ATCCAGAAAGAGTCGACCCTGCA 3947 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 3973 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4032 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 4033 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4092 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 4093 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4152 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 4153 ATCCAGAAAGAGTCGACCCTGCA 4175 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 4201 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4260 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 4261 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4320 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 4321 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4380 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 4381 ATCCAGAAAGAGTCGACCCTGCA 4403 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 4429 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4488 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 4489 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 4548 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 4549 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4608 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 4609 ATCCAGAAAGAGTCGACCCTGCA 4631 >seq15871 Length=707613 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||||||||| | || |||||| ||||||| | || |||||| | Sbjct 27375 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCC 27316 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| |||||| | ||| || || || |||||||| || || || ||| Sbjct 27315 AGTGACACCATCGAGAATGTCAAGGGGAAGATACAAGAAAAAGAAGGCATCCCCCCAGAC 27256 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || ||||| | ||||||| ||||| || || ||| Sbjct 27255 CAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 27196 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| ||||| || || | || || | || ||||| || Sbjct 27195 AACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 27146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433238082544190