Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq8498 107 2e-18
seq7844 93.3 4e-14
seq6202 87.8 2e-12
seq10972 82.4 6e-11
>seq8498
Length=279317
Score = 107 bits (118), Expect = 2e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| |||||||| || || | || || || || ||||||| || || ||| ||
Sbjct 98709 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 98768
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || || || || ||||| || ||||| || ||
Sbjct 98769 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 98828
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||| | || || ||||| ||||| || | || ||| || ||| | || || |||
Sbjct 98829 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTAC 98888
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434
||||||||||| || ||||| | ||| |||| ||| ||
Sbjct 98889 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 98927
>seq7844
Length=401405
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || |||||||| || || || || | ||||| || || |||| || || |||||
Sbjct 262904 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 262963
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| || ||| | || | | || || || || || ||||| || ||||| ||
Sbjct 262964 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 263023
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || | || || ||||||||||| ||| | || ||| |||||| | || |||
Sbjct 263024 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 263083
Query 22393 TACAACATTCAAAAAGAATCCACC 22416
|||||||| || ||||| || |||
Sbjct 263084 TACAACATCCAGAAAGAGTCGACC 263107
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| | || ||||| |||
Sbjct 263138 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 263197
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 263198 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 263257
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 263258 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 263317
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 263318 ATCCAGAAAGAGTCGACC 263335
>seq6202
Length=441370
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 3061 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3120
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 3121 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3180
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 3181 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3240
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 3241 ATCCAGAAAGAGTCGACC 3258
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 3289 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3348
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 3349 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3408
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 3409 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3468
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 3469 ATCCAGAAAGAGTCGACC 3486
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 3517 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3576
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 3577 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3636
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 3637 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3696
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 3697 ATCCAGAAAGAGTCGACC 3714
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 3745 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3804
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 3805 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3864
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 3865 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3924
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 3925 ATCCAGAAAGAGTCGACC 3942
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 3973 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4032
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 4033 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4092
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 4093 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4152
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 4153 ATCCAGAAAGAGTCGACC 4170
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 4201 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4260
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 4261 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4320
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 4321 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4380
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 4381 ATCCAGAAAGAGTCGACC 4398
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| || || ||||| |||
Sbjct 4429 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4488
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | | || || || || || ||||| || ||||| || || ||
Sbjct 4489 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 4548
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | || || ||||||||||| ||| | || ||| |||||| | || |||||||||
Sbjct 4549 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4608
Query 22399 ATTCAAAAAGAATCCACC 22416
|| || ||||| || |||
Sbjct 4609 ATCCAGAAAGAGTCGACC 4626
>seq10972
Length=1569106
Score = 82.4 bits (90), Expect = 6e-11
Identities = 162/239 (68%), Gaps = 8/239 (3%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | || || || || | ||||| || || ||| ||
Sbjct 1317656 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAACCC 1317715
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | || || || || || ||||| || ||||| || ||
Sbjct 1317716 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1317775
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC-AC-------CGCACCGTCT 22387
|| ||| | || || ||||| ||||| || | || ||| || || || | |
Sbjct 1317776 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTATGGACGTACTTTGT 1317835
Query 22388 CCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || |||||||||||||| || ||||| | ||| |||| ||| || | || || |||
Sbjct 1317836 CTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGAATTCGTGGTGGT 1317894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419640904603690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |