Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8498 107 2e-18 seq7844 93.3 4e-14 seq6202 87.8 2e-12 seq10972 82.4 6e-11 >seq8498 Length=279317 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || ||||||| || || ||| || Sbjct 98709 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 98768 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || || Sbjct 98769 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 98828 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | || ||| || ||| | || || ||| Sbjct 98829 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTAC 98888 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 ||||||||||| || ||||| | ||| |||| ||| || Sbjct 98889 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 98927 >seq7844 Length=401405 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| || || ||||| Sbjct 262904 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 262963 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || ||||| || ||||| || Sbjct 262964 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 263023 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 263024 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 263083 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 263084 TACAACATCCAGAAAGAGTCGACC 263107 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| | || ||||| ||| Sbjct 263138 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 263197 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 263198 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 263257 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 263258 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 263317 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 263318 ATCCAGAAAGAGTCGACC 263335 >seq6202 Length=441370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3061 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3120 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 3121 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3180 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 3181 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3240 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 3241 ATCCAGAAAGAGTCGACC 3258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3289 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3348 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 3349 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3408 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 3409 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3468 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 3469 ATCCAGAAAGAGTCGACC 3486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3517 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3576 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 3577 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3636 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 3637 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3696 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 3697 ATCCAGAAAGAGTCGACC 3714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3745 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 3804 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 3805 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 3864 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 3865 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 3924 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 3925 ATCCAGAAAGAGTCGACC 3942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 3973 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4032 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 4033 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4092 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 4093 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4152 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 4153 ATCCAGAAAGAGTCGACC 4170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 4201 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4260 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 4261 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4320 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 4321 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4380 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 4381 ATCCAGAAAGAGTCGACC 4398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 4429 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4488 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || || ||||| || ||||| || || || Sbjct 4489 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 4548 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| |||||| | || ||||||||| Sbjct 4549 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 4608 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 4609 ATCCAGAAAGAGTCGACC 4626 >seq10972 Length=1569106 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/239 (68%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || || | ||||| || || ||| || Sbjct 1317656 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAACCC 1317715 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || || Sbjct 1317716 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 1317775 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC-AC-------CGCACCGTCT 22387 || ||| | || || ||||| ||||| || | || ||| || || || | | Sbjct 1317776 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTATGGACGTACTTTGT 1317835 Query 22388 CCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||||||||||||| || ||||| | ||| |||| ||| || | || || ||| Sbjct 1317836 CTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGAATTCGTGGTGGT 1317894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419640904603690