Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq8498 118 9e-22
seq11172 105 6e-18
seq10972 104 2e-17
seq7844 98.7 8e-16
seq6202 98.7 8e-16
seq1447 87.8 2e-12
>seq8498
Length=279317
Score = 118 bits (130), Expect = 9e-22
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 114160 CACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAG 114219
|||| |||||||| |||| ||| | || || || |||||||||||||| || || |
Sbjct 98934 CACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGG 98875
Query 114220 TACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGC 114279
|||| |||||| ||||| || ||||| |||| || | || ||||| |||||||| |
Sbjct 98874 TACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTC 98815
Query 114280 CTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCA 114339
|||| || || ||||| |||| | ||| | || || | || |||||| || |
Sbjct 98814 CTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGA 98755
Query 114340 CGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || || || ||||| || || ||||||||||||||
Sbjct 98754 GAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 98712
>seq11172
Length=1040880
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||| | |||||||| |||| ||| | || || || |||||||||||||| ||
Sbjct 4322 ACCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 4381
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||||| |||||| ||||| || |||| |||| || | || ||||| |||||
Sbjct 4382 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGG 4441
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || ||||| |||| | ||| | || || | || |||||
Sbjct 4442 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGAC 4501
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || ||||| || || || |||||||||||
Sbjct 4502 CTCGAGAGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCAT 4549
>seq10972
Length=1569106
Score = 104 bits (114), Expect = 2e-17
Identities = 165/236 (70%), Gaps = 8/236 (3%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| | |||||| |||| ||| | || || || |||||||||||||| ||
Sbjct 1317894 ACCACCACGAATTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 1317835
Query 114215 CATAGTACG---AGA-----ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGG 114266
|| |||||| | | |||||| ||||| || ||||| |||| || | || |||
Sbjct 1317834 CAAAGTACGTCCATACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGG 1317775
Query 114267 TCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTG 114326
|| |||||||| ||||| || || ||||| |||| | ||| | || || | |
Sbjct 1317774 TCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAG 1317715
Query 114327 GATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| |||||| || | || | || || || ||||| || || || |||||||||||
Sbjct 1317714 GGTTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 1317659
>seq7844
Length=401405
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 263334 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 263275
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 263274 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 263215
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 263214 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 263155
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 263154 TTCACGAAGATCTGCAT 263138
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 263106 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 263047
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| || ||||||||||| || || ||||| ||
Sbjct 263046 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 262987
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 262986 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 262927
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || || |||||
Sbjct 262926 TTCACGAAGATTTGCAT 262910
>seq6202
Length=441370
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 3257 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3198
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 3197 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3138
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 3137 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3078
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 3077 TTCACGAAGATCTGCAT 3061
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 3485 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3426
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 3425 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3366
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 3365 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3306
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 3305 TTCACGAAGATCTGCAT 3289
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 3713 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3654
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 3653 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3594
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 3593 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3534
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 3533 TTCACGAAGATCTGCAT 3517
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 3941 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 3882
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 3881 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 3822
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 3821 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3762
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 3761 TTCACGAAGATCTGCAT 3745
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 4169 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4110
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 4109 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 4050
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 4049 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 3990
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 3989 TTCACGAAGATCTGCAT 3973
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 4397 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4338
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| |||||||||||||| || || ||||| ||
Sbjct 4337 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 4278
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 4277 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 4218
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 4217 TTCACGAAGATCTGCAT 4201
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || |||||| || || || ||
Sbjct 4625 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4566
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| || ||||||||||| || || ||||| ||
Sbjct 4565 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 4506
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| ||| | || ||||||||||| ||
Sbjct 4505 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 4446
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 4445 TTCACGAAGATCTGCAT 4429
>seq1447
Length=2301054
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||| | |||||||| |||| ||| | || | || |||||||||||||| ||
Sbjct 2079806 ACCTCCATGAAGTCTCAACACTAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGA 2079865
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| |||| | |||||| ||||| || ||||| |||| | | || || || |||||
Sbjct 2079866 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGG 2079925
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || ||||| |||| | ||| | || || | || ||| ||
Sbjct 2079926 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAAC 2079985
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| | || | || || || |||| || || || |||||||||||
Sbjct 2079986 CTTGAGAGTGATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCAT 2080033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420047220273912
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