Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq11817 87.8 3e-12
seq6424 87.8 3e-12
>seq11817
Length=981421
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| || ||| |||| |||||| | || || || || || ||||||||||| | || ||
Sbjct 476830 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCT 476771
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || |||||||| ||| | | ||| || |||||||||||||| || || || || ||
Sbjct 476770 GCTATATTCTGGCTAAAGAAAAGAGGACTC-ATGCCCGGACTCACTTTTTCCAATGAGCT 476712
Query 42815 CATCAGCAGGGACGA 42829
||||||||| || ||
Sbjct 476711 CATCAGCAGAGATGA 476697
>seq6424
Length=433988
Score = 87.8 bits (96), Expect = 3e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
||||||||||| |||| || || ||||||||||| || || | || || || || ||||
Sbjct 17643 TGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCAATATTCT 17702
Query 42766 GGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||||||| | ||| | |||||| || ||||| || || || ||||| || |||||
Sbjct 17703 GGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 17761
Query 42825 GACGAGG 42831
|| ||||
Sbjct 17762 GATGAGG 17768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944138221009760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |