Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq8308 123 3e-23 >seq8308 Length=311946 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| ||||||||||| || ||||||||||| || | Sbjct 88330 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 88271 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 ||||||||||||| ||||| | ||||| ||| || || || || || |||| || | Sbjct 88270 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGA 88211 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTG 10006 | || |||||||| ||||| || ||| Sbjct 88210 AGCTGAAGACCCTCCGGCTGCGGCTG 88185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 9875 TGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCATGCCACAGGCTGAA 9934 ||||| || |||| ||| ||||||| || ||||||||| | || | ||||||||||| Sbjct 93212 TGCCAAACCTTGTCGGAAGTGATCCAGTTTTACCTGGAGAAGGTGGTTCCACAGGCTGAG 93271 Query 9935 AACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAAATCTAAAGACCCTA 9994 |||| | ||||| ||| || || || ||||| |||| || || ||| ||||||| Sbjct 93272 AACCGTGGGCCTGAGATCAAGGAGCACGTGAATTCGCTGGGGGAGAAGCTAGAGACCCTG 93331 Query 9995 CGGCTCCGCCTG-CGCA 10010 |||| || ||| |||| Sbjct 93332 TGGCTGCGACTGACGCA 93348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552599168047040