Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8498 98.7 7e-16 seq11172 82.4 5e-11 >seq8498 Length=279317 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||| | || | ||| || |||| |||||| || || || ||||| |||||||| || | Sbjct 98938 CCATCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA--G 98881 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | ||| |||||||| | |||| | || ||||| | Sbjct 98880 ACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 98821 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || || ||| |||||| ||||||| ||||| ||| | Sbjct 98820 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 98761 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || || ||||| || || |||||||| ||||| || Sbjct 98760 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709 >seq11172 Length=1040880 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | ||| || |||| |||||| || || || ||||| |||||||| || Sbjct 4323 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 4382 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| ||||||| | |||| | || ||||| ||| Sbjct 4383 AAAGTACATCCATCTTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGA 4442 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| || || || || Sbjct 4443 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACC 4502 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || ||||| || || || ||||| ||||| || Sbjct 4503 TCGAGAGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCATCTT 4552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357317839596410