Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq11172 123 1e-22
seq8498 114 5e-20
seq10972 105 3e-17
seq1447 105 3e-17
seq5002 104 9e-17
seq2002 100 1e-15
seq13361 95.1 5e-14
seq11249 89.7 2e-12
seq8127 89.7 2e-12
>seq11172
Length=1040880
Score = 123 bits (136), Expect = 1e-22
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || |||||||| || || || ||||| || || || | ||
Sbjct 4549 ATGCAGATTTTCGTGAAGACCCTGACTGGGAAGACCATCACTCTCGAGGTCGAGCCCTCA 4490
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 4489 GAAACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 4430
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || || || || ||||| ||||||||| | |||||| | || || ||
Sbjct 4429 CAAAGACTGATCTTTTCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 4370
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| |||| || |||||
Sbjct 4369 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 4332
>seq8498
Length=279317
Score = 114 bits (126), Expect = 5e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || || || ||||| || || || || ||||| || || ||| | ||
Sbjct 98712 ATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 98771
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 98772 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 98831
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || ||||| ||||||||| | || ||| | || || ||
Sbjct 98832 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAAC 98891
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| |||| || |||||
Sbjct 98892 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 98929
>seq10972
Length=1569106
Score = 105 bits (116), Expect = 3e-17
Identities = 157/224 (70%), Gaps = 8/224 (4%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || ||||| || || || |||||||| || || ||| | ||
Sbjct 1317659 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAACCCTCG 1317718
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 1317719 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 1317778
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAG--------ATGGAAGAACTTTGGCGG 391221
||| | | || || | || || ||||| |||| ||||| | |||||| | |
Sbjct 1317779 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTATGGACGTACTTTGTCTG 1317838
Query 391222 ATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGA 391265
| || || ||| | ||||| | || ||||| |||| || |||
Sbjct 1317839 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 1317882
>seq1447
Length=2301054
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || |||| || || || || ||||| | |||||| | ||
Sbjct 2080033 ATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCACTCTCAAGGTTGAACCCTCG 2079974
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 2079973 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 2079914
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | || || | || || ||||| ||||||||| |||||| | || || ||
Sbjct 2079913 CAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAAC 2079854
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| || ||||| |||| || |||||
Sbjct 2079853 ATTCAAAAGGAGTTCACTCTTCATCTAGTGTTGAGACT 2079816
>seq5002
Length=2202687
Score = 104 bits (114), Expect = 9e-17
Identities = 184/263 (70%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289
|||||| || ||||| ||||| ||||| || || || | ||| || ||
Sbjct 353071 TGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGG 353130
Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349
||| |||||| ||| | || |||||| |||||| | || | |||| ||||||| ||
Sbjct 353131 CATACCTCCTGCCCCACGTGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 353190
Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407
||| ||||| ||||| ||| || || || | || | |||||| |||| || |||||
Sbjct 353191 TGGCATTCTCAATGTCTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 353248
Query 452408 ATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCA 452467
|| |||||||| || ||| || || |||||||||||| ||||| | ||||||
Sbjct 353249 ATCACTAATGACAAGGGCCGCTTGAGCAAGGAAGATATTGAACGCATGGTTCAAGAAGCA 353308
Query 452468 GAAAAATTCAAGGATGATGATGA 452490
|| || | ||| | ||| |||||
Sbjct 353309 GAGAAGTACAAAGCTGAAGATGA 353331
>seq2002
Length=2058770
Score = 100 bits (110), Expect = 1e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| ||||||| ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 405582 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 405523
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||||||||| || ||||| | | || || ||||| ||
Sbjct 405522 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 405470
>seq13361
Length=1652743
Score = 95.1 bits (104), Expect = 5e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115
|||||||| || || |||| || || || || |||||||| || | | | |||| |
Sbjct 1224217 ATTTTCGTGAAGACCCTGATGGGGAAGACCATCACTCTTGAGGTCAAGCCCCCGGATAGC 1224158
Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175
|| ||| | | || || || || ||||||||||||||||||||||| | ||| |
Sbjct 1224157 ATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACTAGCAAAGA 1224098
Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235
| || || | || || ||||| ||||||||| | |||||| | || || | ||| |
Sbjct 1224097 CTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAGCATTCAA 1224038
Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||||| | || ||| | | || || |||||
Sbjct 1224037 AAGGAGTCCACTCTTGATCTTGTGTTGAGACT 1224006
>seq11249
Length=2935049
Score = 89.7 bits (98), Expect = 2e-12
Identities = 168/245 (69%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||| | |||||||||||| || || | ||||| ||| || | || | || |
Sbjct 278755 TGCAATCTCTGGCACTAGGGGGTCATCTAGGTTTGGATCA--CATAGCAGTGAACAAATG 278812
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166
|||||||| |||||| ||| |||| || || ||| | | ||| |||||| | |
Sbjct 278813 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 278872
Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226
||||| || || | ||||||||||||||||||| ||| ||||| || |||
Sbjct 278873 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 278932
Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286
|| || || | || |||||| ||||||| |||| || |||||| || || | |
Sbjct 278933 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 278992
Query 96287 TAGGG 96291
|| ||
Sbjct 278993 TATGG 278997
>seq8127
Length=1576600
Score = 89.7 bits (98), Expect = 2e-12
Identities = 168/245 (69%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||| | |||||||||||| || || || ||||| ||| || | || | || |
Sbjct 678323 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 678380
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166
|||||||| |||||| ||| |||| || || ||| | | ||| |||||| | |
Sbjct 678381 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 678440
Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226
||||| || || | ||||||||||||||||||| ||| ||||| || |||
Sbjct 678441 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 678500
Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286
|| || || | || | |||| ||||||| |||| || |||||| || || | |
Sbjct 678501 GGTGGTTTGAAGGGGTGGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 678560
Query 96287 TAGGG 96291
|| ||
Sbjct 678561 TATGG 678565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975287405674808
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