Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq11172 123 1e-22 seq8498 114 5e-20 seq10972 105 3e-17 seq1447 105 3e-17 seq5002 104 9e-17 seq2002 100 1e-15 seq13361 95.1 5e-14 seq11249 89.7 2e-12 seq8127 89.7 2e-12 >seq11172 Length=1040880 Score = 123 bits (136), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||||||| || || || ||||| || || || | || Sbjct 4549 ATGCAGATTTTCGTGAAGACCCTGACTGGGAAGACCATCACTCTCGAGGTCGAGCCCTCA 4490 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 4489 GAAACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 4430 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || || || || ||||| ||||||||| | |||||| | || || || Sbjct 4429 CAAAGACTGATCTTTTCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 4370 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 4369 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 4332 >seq8498 Length=279317 Score = 114 bits (126), Expect = 5e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || ||||| || || || || ||||| || || ||| | || Sbjct 98712 ATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 98771 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 98772 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 98831 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | || ||| | || || || Sbjct 98832 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTCTGACTACAAC 98891 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 98892 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 98929 >seq10972 Length=1569106 Score = 105 bits (116), Expect = 3e-17 Identities = 157/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || |||||||| || || ||| | || Sbjct 1317659 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAACCCTCG 1317718 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 1317719 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 1317778 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAG--------ATGGAAGAACTTTGGCGG 391221 ||| | | || || | || || ||||| |||| ||||| | |||||| | | Sbjct 1317779 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTATGGACGTACTTTGTCTG 1317838 Query 391222 ATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGA 391265 | || || ||| | ||||| | || ||||| |||| || ||| Sbjct 1317839 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 1317882 >seq1447 Length=2301054 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || || || || ||||| | |||||| | || Sbjct 2080033 ATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCACTCTCAAGGTTGAACCCTCG 2079974 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 2079973 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 2079914 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || | || || ||||| ||||||||| |||||| | || || || Sbjct 2079913 CAAAGACAGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAAC 2079854 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| || ||||| |||| || ||||| Sbjct 2079853 ATTCAAAAGGAGTTCACTCTTCATCTAGTGTTGAGACT 2079816 >seq5002 Length=2202687 Score = 104 bits (114), Expect = 9e-17 Identities = 184/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||| || ||||| ||||| ||||| || || || | ||| || || Sbjct 353071 TGAAGGTGAGCGTGCCATGACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGG 353130 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 ||| |||||| ||| | || |||||| |||||| | || | |||| ||||||| || Sbjct 353131 CATACCTCCTGCCCCACGTGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 353190 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407 ||| ||||| ||||| ||| || || || | || | |||||| |||| || ||||| Sbjct 353191 TGGCATTCTCAATGTCTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 353248 Query 452408 ATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCA 452467 || |||||||| || ||| || || |||||||||||| ||||| | |||||| Sbjct 353249 ATCACTAATGACAAGGGCCGCTTGAGCAAGGAAGATATTGAACGCATGGTTCAAGAAGCA 353308 Query 452468 GAAAAATTCAAGGATGATGATGA 452490 || || | ||| | ||| ||||| Sbjct 353309 GAGAAGTACAAAGCTGAAGATGA 353331 >seq2002 Length=2058770 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 405582 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 405523 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 405522 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 405470 >seq13361 Length=1652743 Score = 95.1 bits (104), Expect = 5e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| || || |||| || || || || |||||||| || | | | |||| | Sbjct 1224217 ATTTTCGTGAAGACCCTGATGGGGAAGACCATCACTCTTGAGGTCAAGCCCCCGGATAGC 1224158 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || ||| | | || || || || ||||||||||||||||||||||| | ||| | Sbjct 1224157 ATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACTAGCAAAGA 1224098 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || | || || ||||| ||||||||| | |||||| | || || | ||| | Sbjct 1224097 CTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAGCATTCAA 1224038 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | || ||| | | || || ||||| Sbjct 1224037 AAGGAGTCCACTCTTGATCTTGTGTTGAGACT 1224006 >seq11249 Length=2935049 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || | ||||| ||| || | || | || | Sbjct 278755 TGCAATCTCTGGCACTAGGGGGTCATCTAGGTTTGGATCA--CATAGCAGTGAACAAATG 278812 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 278813 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 278872 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 278873 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 278932 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || |||||| ||||||| |||| || |||||| || || | | Sbjct 278933 GGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 278992 Query 96287 TAGGG 96291 || || Sbjct 278993 TATGG 278997 >seq8127 Length=1576600 Score = 89.7 bits (98), Expect = 2e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||| | |||||||||||| || || || ||||| ||| || | || | || | Sbjct 678323 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 678380 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | | ||| |||||| | | Sbjct 678381 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAGA 678440 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 678441 CAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 678500 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCA 96286 || || || | || | |||| ||||||| |||| || |||||| || || | | Sbjct 678501 GGTGGTTTGAAGGGGTGGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTTGA 678560 Query 96287 TAGGG 96291 || || Sbjct 678561 TATGG 678565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975287405674808