Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq8872 170 1e-36
seq8009 170 1e-36
seq4670 100 2e-15
seq115 100 2e-15
>seq8872
Length=1380361
Score = 170 bits (188), Expect = 1e-36
Identities = 902/1419 (64%), Gaps = 56/1419 (4%)
Strand=Plus/Minus
Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309
||||| | |||| ||||| ||||| ||||||||||| | |||||| |||||||| ||
Sbjct 973493 TTATCCACAGCAGAGACATTGAGAATGCCATTGGCATCAATATCAAAAGTGACTTCCATC 973434
Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA-TT 517368
||||| || || | | ||||| || || ||| | | |||| || ||| | ||
Sbjct 973433 TGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAT-TTGGCAGGCAAGTT 973375
Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 517427
|||| || || | |||| ||||| | ||| || || |||| | ||| || |
Sbjct 973374 GCTATCCTTGGTCATGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACCAGGCTGGT 973316
Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCA 517486
| || || || || || || | |||| | | || |||||| |||| || |
Sbjct 973315 TGTCAGAGTAGGTGGTGAA-AGTCTGCGTCTGCTTTGTAGGAATGGTTGCATTGTGCTTG 973257
Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546
| | | ||||| | ||||| || ||||| | ||||| |||||||||||||||||
Sbjct 973256 AGGACA---GTCATGACTCCACCAGCGGTTTCAATTCCAAGGGAAAGAGGAGTGACATCC 973200
Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 517606
| || | | | ||||| |||||| | | ||| || ||| ||| | || | |
Sbjct 973199 AACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGAAAAAATGGCTACCTGGACA 973140
Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666
|| ||||||||||||| ||| ||| | || || | | | ||||| || ||| ||||||
Sbjct 973139 GCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTCTTTCCCATTG 973080
Query 517667 AAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATAC 517725
|| || | ||||||| ||| | ||| || || | | ||| || || || | ||
Sbjct 973079 AAGAAGTCCTGGAGAAGTT-TCTCAGTCTTGGGGATGTGGGTTGAGCCACCCACCGAGAC 973021
Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC--GGGT 517783
||| ||||| | ||| || || |||| || | ||| | | |||| || | ||||
Sbjct 973020 AATATCATGGATCTGAGACTTGTCCATCTTGGCATCTGA-AGGGCTTTCTCCATAAGGGT 972962
Query 517784 TCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 517843
|| | | | | |||||||| | | | |||||| |||| | ||| ||
Sbjct 972961 CCAGGGTGC-CACAGAACAAGTCAGCATTCAATTCTTCAAATT--------GGAAGT-TG 972912
Query 517844 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 517903
| ||||||| | || ||||||| ||||| | | ||| || |||
Sbjct 972911 A------------TTCCTTCATAGAAGGAATCAATCTCAATACTGGCTTGGGTGCTGGAA 972864
Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGC 517959
|| || | || |||||| | ||| | | || || | | | || || | |
Sbjct 972863 GAGAGAGTGCGCTTAGCAAGCTCAGAAACAGTATGGAGGCAACAGACAGCCCTCTTGTTC 972804
Query 517960 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACA 518017
| |||| ||| | || | ||| |||||||| ||||||| | ||| | ||
Sbjct 972803 TCCCTGAT----ATCCTTCTTGTGTTTGCTCTTGAACTCTTCAATGAA--ATGGTTGACC 972750
Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077
| ||| | | ||||| || ||| |||| ||| | ||| | | || |
Sbjct 972749 TTGCCATTGGCGACGTCTTCTCCAGACAA----GTATCTCCAGCTATAGATTTGACCTCA 972694
Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137
|| | |||||| ||| || | | | |||||| | |||||||||| ||||||
Sbjct 972693 AAGATTCCATCCTCAGTAGTGAGGACTGACACATCAAAA-TGCCACCACCCAAATCAAAG 972635
Query 518138 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197
|| || ||||| | ||| | ||||| || | ||||| ||| ||||||||||
Sbjct 972634 ATCAGCACATTTCTCTCTGCTCCAACCTTTTTGTCTAAGCCATAGGCAGGAGCAGCAGCA 972575
Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257
|||| |||| | || ||||| | ||| | ||| ||||||| |||| |||||||| |||
Sbjct 972574 GTTGTTTCACTGATGATTCTAAGTACACTGAGA-CAGCAATAGTTCCAGCATCTTTGGTG 972516
Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317
|| || | || || || ||||| || ||||| || || | ||| || | || ||
Sbjct 972515 GCCTGACGCTGAGAGTCATTAAAGTAGGCAGGTACTGTGACAACAGCGTTGGTAACAGTC 972456
Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377
|| |||| | || || ||| ||| | || | | | ||| ||||| | |
Sbjct 972455 TTCCCAAGGCAGGCTTCTGTGATTTCCTTCCTCTTTGTCAGGACCATGGATGACACCTCC 972396
Query 518378 TC-TGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 518436
|| || || | | ||| | | ||| ||| ||||| || | ||| | | |
Sbjct 972395 TCTTGATCAAAACTCTTTGTCTCCCCCTTG-TATTCTACTTAAACCTTAGGTCTGCCAGC 972337
Query 518437 AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496
| |||| || | || ||||| | ||||||||| || || ||| ||||||||
Sbjct 972336 ATCATTTGCCACCATGAAGGGCCAATGTTTCATATCAGACTGGACAACAGCATCATTAAA 972277
Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTG 518556
|| ||| | | | |||| |||||||||| || ||||| ||||| |||| ||||
Sbjct 972276 TCTTCATCCACTAAGTTGTTTGGCATCAAAAACTGTGTTGGTGGGATTCATTGTGACTTG 972217
Query 518557 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 518616
| || || ||||| | |||| ||| || | ||||| | ||||| ||| ||
Sbjct 972216 GTTCTTTGCAGCATCACTGATCAATCGTTTGGTATTAGTAAAGGTGACATAGCTTGGGGT 972157
Query 518617 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655
|| | || || |||||||| ||||| ||||| || ||
Sbjct 972156 GGTTCAGTTCCCCTGATCATTGGCAATTATTTCCACCTT 972118
>seq8009
Length=358766
Score = 170 bits (188), Expect = 1e-36
Identities = 897/1412 (64%), Gaps = 24/1412 (2%)
Strand=Plus/Plus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
|| || ||||| ||||||||||||||||| | ||||| || || ||||| || || ||
Sbjct 177773 GCTGTTACATTGAGAATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACT 177832
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| || | || || ||||| || || || ||| ||||| || || || |
Sbjct 177833 CCCCTGGGTGCCGGAGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGA 177892
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438
|| | | || ||||| | | ||||| || | | ||||| ||||| ||
Sbjct 177893 GTCATGGCCCTCTCGCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAG 177952
Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497
|| || || | |||| | | ||| || || || | ||| | | || | ||
Sbjct 177953 GTGGTGAAAA-TCTGTGTCTGCTTAGTGGGGATGGTGGAGTTGCGCTTGATTAGTACAGT 178011
Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557
||| | || ||||| || || ||||| | ||| || |||| || || | | | |
Sbjct 178012 CATGACTCCCCCTGCGGTCTCCAAACCTAAAGACAGGGGAGCCACGTCCAACAAAAGCAG 178071
Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617
| || | |||||| | | || | | ||| ||||| |||| ||||| |||||
Sbjct 178072 GTCCTGTACCTTTTCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATA 178131
Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 517676
||||| || ||||| || || | | | || || | |||||| || | | |||
Sbjct 178132 GGCAACTGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCTTG 178191
Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736
|| | | | |||||||| || |||| || || || ||||| ||||| ||||| |
Sbjct 178192 CAACAGCCTCTGA-ACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGA 178250
Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796
| | |||||||| || | |||| | | | || || || || || || | |
Sbjct 178251 TTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCC 178310
Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 517854
|||||| ||||| ||| | ||||| || ||||| || || || | || || ||
Sbjct 178311 TAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTC 178368
Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914
||| ||||| | | || |||| ||| | | | || || ||| || || | |
Sbjct 178369 AATGCCTTCATAAAGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCT 178428
Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCA 517970
|| || | || || || || | | | | | || |||| | ||| ||||
Sbjct 178429 CTTGGCCCTCTCGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG-- 178486
Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030
|| | |||| ||| |||||||| ||||| ||| | | ||||| | || ||||
Sbjct 178487 --TCCTTCTTATGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAA 178544
Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090
|||| || || ||||| | || | || | || || | || | |||| ||||| |
Sbjct 178545 AATCCTCTCCACCCAAGTGGGTGTCCCCGGCTGTGGCCTTAACCTCAAAAATCCCATCAT 178604
Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC 518149
| | | || | | |||||| || || ||||||| |||||| || | |||| ||
Sbjct 178605 CTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTC 178664
Query 518150 ATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208
| || || | || ||| | | ||| ||||| |||| ||||||||||| ||||||||
Sbjct 178665 GCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATT 178722
Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268
|||||||| | ||||| ||||| || || |||||||| || ||||| || | ||
Sbjct 178723 GATAATTCTTAGCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTG 178782
Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328
|| || || || || || || ||||| || || |||| ||| || | || | | |
Sbjct 178783 AGAGTCATTGAAGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAA 178842
Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388
||| || || | ||||| ||| | | | ||| || || |||| || || || |
Sbjct 178843 AGCCTCAGCAGTCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-A 178901
Query 518389 TTGCTTGGATT--CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 518446
|||| || | |||| || || || | | || || || | || ||
Sbjct 178902 AAGCTTTCTTTTCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATT 178960
Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506
|||| || ||||| ||||||||||||||| || | |||||||| | ||| ||
Sbjct 178961 ACTTGGAAAGGCCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCG 179020
Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566
|| | ||||| |||||||| | ||| || ||||| || || | || | |||||
Sbjct 179021 ATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCC 179080
Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626
||||| || || || | || || ||||| || | || || || || ||||| ||
Sbjct 179081 GCATCGCCGATGAGCCGCTCGGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 179140
Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACC 518658
|| || || || || || || || || || ||
Sbjct 179141 CCCTGGTCGTTGGCGATGATCTCTACCTTGCC 179172
>seq4670
Length=477803
Score = 100 bits (110), Expect = 2e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| |
Sbjct 417124 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 417065
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| |
Sbjct 417064 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 417005
Query 635561 GATGCTAGTCCTAAA 635575
|| ||| || ||||
Sbjct 417004 GAAGCTTCTCATAAA 416990
>seq115
Length=644410
Score = 100 bits (110), Expect = 2e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || ||
Sbjct 185545 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 185486
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||||||| |||| |||||||| || || || | || || || ||||| ||
Sbjct 185485 TTGAGTCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAG 185426
Query 518285 GCAGGAACAGTAATAACGGC 518304
||||| || || | ||| ||
Sbjct 185425 GCAGGTACTGTGACAACAGC 185406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779977513796356
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