Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8872 170 1e-36 seq8009 170 1e-36 seq4670 100 2e-15 seq115 100 2e-15 >seq8872 Length=1380361 Score = 170 bits (188), Expect = 1e-36 Identities = 902/1419 (64%), Gaps = 56/1419 (4%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||| ||||| ||||||||||| | |||||| |||||||| || Sbjct 973493 TTATCCACAGCAGAGACATTGAGAATGCCATTGGCATCAATATCAAAAGTGACTTCCATC 973434 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA-TT 517368 ||||| || || | | ||||| || || ||| | | |||| || ||| | || Sbjct 973433 TGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAT-TTGGCAGGCAAGTT 973375 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 517427 |||| || || | |||| ||||| | ||| || || |||| | ||| || | Sbjct 973374 GCTATCCTTGGTCATGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACCAGGCTGGT 973316 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCA 517486 | || || || || || || | |||| | | || |||||| |||| || | Sbjct 973315 TGTCAGAGTAGGTGGTGAA-AGTCTGCGTCTGCTTTGTAGGAATGGTTGCATTGTGCTTG 973257 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 | | | ||||| | ||||| || ||||| | ||||| ||||||||||||||||| Sbjct 973256 AGGACA---GTCATGACTCCACCAGCGGTTTCAATTCCAAGGGAAAGAGGAGTGACATCC 973200 Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 517606 | || | | | ||||| |||||| | | ||| || ||| ||| | || | | Sbjct 973199 AACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGAAAAAATGGCTACCTGGACA 973140 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 || ||||||||||||| ||| ||| | || || | | | ||||| || ||| |||||| Sbjct 973139 GCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTCTTTCCCATTG 973080 Query 517667 AAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 || || | ||||||| ||| | ||| || || | | ||| || || || | || Sbjct 973079 AAGAAGTCCTGGAGAAGTT-TCTCAGTCTTGGGGATGTGGGTTGAGCCACCCACCGAGAC 973021 Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC--GGGT 517783 ||| ||||| | ||| || || |||| || | ||| | | |||| || | |||| Sbjct 973020 AATATCATGGATCTGAGACTTGTCCATCTTGGCATCTGA-AGGGCTTTCTCCATAAGGGT 972962 Query 517784 TCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTG 517843 || | | | | |||||||| | | | |||||| |||| | ||| || Sbjct 972961 CCAGGGTGC-CACAGAACAAGTCAGCATTCAATTCTTCAAATT--------GGAAGT-TG 972912 Query 517844 ACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAA 517903 | ||||||| | || ||||||| ||||| | | ||| || ||| Sbjct 972911 A------------TTCCTTCATAGAAGGAATCAATCTCAATACTGGCTTGGGTGCTGGAA 972864 Query 517904 GATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGC 517959 || || | || |||||| | ||| | | || || | | | || || | | Sbjct 972863 GAGAGAGTGCGCTTAGCAAGCTCAGAAACAGTATGGAGGCAACAGACAGCCCTCTTGTTC 972804 Query 517960 TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACA 518017 | |||| ||| | || | ||| |||||||| ||||||| | ||| | || Sbjct 972803 TCCCTGAT----ATCCTTCTTGTGTTTGCTCTTGAACTCTTCAATGAA--ATGGTTGACC 972750 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 | ||| | | ||||| || ||| |||| ||| | ||| | | || | Sbjct 972749 TTGCCATTGGCGACGTCTTCTCCAGACAA----GTATCTCCAGCTATAGATTTGACCTCA 972694 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 || | |||||| ||| || | | | |||||| | |||||||||| |||||| Sbjct 972693 AAGATTCCATCCTCAGTAGTGAGGACTGACACATCAAAA-TGCCACCACCCAAATCAAAG 972635 Query 518138 ATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || || ||||| | ||| | ||||| || | ||||| ||| |||||||||| Sbjct 972634 ATCAGCACATTTCTCTCTGCTCCAACCTTTTTGTCTAAGCCATAGGCAGGAGCAGCAGCA 972575 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 |||| |||| | || ||||| | ||| | ||| ||||||| |||| |||||||| ||| Sbjct 972574 GTTGTTTCACTGATGATTCTAAGTACACTGAGA-CAGCAATAGTTCCAGCATCTTTGGTG 972516 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 || || | || || || ||||| || ||||| || || | ||| || | || || Sbjct 972515 GCCTGACGCTGAGAGTCATTAAAGTAGGCAGGTACTGTGACAACAGCGTTGGTAACAGTC 972456 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 || |||| | || || ||| ||| | || | | | ||| ||||| | | Sbjct 972455 TTCCCAAGGCAGGCTTCTGTGATTTCCTTCCTCTTTGTCAGGACCATGGATGACACCTCC 972396 Query 518378 TC-TGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 518436 || || || | | ||| | | ||| ||| ||||| || | ||| | | | Sbjct 972395 TCTTGATCAAAACTCTTTGTCTCCCCCTTG-TATTCTACTTAAACCTTAGGTCTGCCAGC 972337 Query 518437 AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 | |||| || | || ||||| | ||||||||| || || ||| |||||||| Sbjct 972336 ATCATTTGCCACCATGAAGGGCCAATGTTTCATATCAGACTGGACAACAGCATCATTAAA 972277 Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTG 518556 || ||| | | | |||| |||||||||| || ||||| ||||| |||| |||| Sbjct 972276 TCTTCATCCACTAAGTTGTTTGGCATCAAAAACTGTGTTGGTGGGATTCATTGTGACTTG 972217 Query 518557 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 518616 | || || ||||| | |||| ||| || | ||||| | ||||| ||| || Sbjct 972216 GTTCTTTGCAGCATCACTGATCAATCGTTTGGTATTAGTAAAGGTGACATAGCTTGGGGT 972157 Query 518617 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655 || | || || |||||||| ||||| ||||| || || Sbjct 972156 GGTTCAGTTCCCCTGATCATTGGCAATTATTTCCACCTT 972118 >seq8009 Length=358766 Score = 170 bits (188), Expect = 1e-36 Identities = 897/1412 (64%), Gaps = 24/1412 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || || ||||| ||||||||||||||||| | ||||| || || ||||| || || || Sbjct 177773 GCTGTTACATTGAGAATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACT 177832 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || | || || ||||| || || || ||| ||||| || || || | Sbjct 177833 CCCCTGGGTGCCGGAGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGA 177892 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | || ||||| | | ||||| || | | ||||| ||||| || Sbjct 177893 GTCATGGCCCTCTCGCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAG 177952 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || || || | |||| | | ||| || || || | ||| | | || | || Sbjct 177953 GTGGTGAAAA-TCTGTGTCTGCTTAGTGGGGATGGTGGAGTTGCGCTTGATTAGTACAGT 178011 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | || ||||| || || ||||| | ||| || |||| || || | | | | Sbjct 178012 CATGACTCCCCCTGCGGTCTCCAAACCTAAAGACAGGGGAGCCACGTCCAACAAAAGCAG 178071 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 | || | |||||| | | || | | ||| ||||| |||| ||||| ||||| Sbjct 178072 GTCCTGTACCTTTTCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATA 178131 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 517676 ||||| || ||||| || || | | | || || | |||||| || | | ||| Sbjct 178132 GGCAACTGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCTTG 178191 Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 || | | | |||||||| || |||| || || || ||||| ||||| ||||| | Sbjct 178192 CAACAGCCTCTGA-ACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGA 178250 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 | | |||||||| || | |||| | | | || || || || || || | | Sbjct 178251 TTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCC 178310 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 517854 |||||| ||||| ||| | ||||| || ||||| || || || | || || || Sbjct 178311 TAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTC 178368 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 ||| ||||| | | || |||| ||| | | | || || ||| || || | | Sbjct 178369 AATGCCTTCATAAAGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCT 178428 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCA 517970 || || | || || || || | | | | | || |||| | ||| |||| Sbjct 178429 CTTGGCCCTCTCGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG-- 178486 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 || | |||| ||| |||||||| ||||| ||| | | ||||| | || |||| Sbjct 178487 --TCCTTCTTATGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAA 178544 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 |||| || || ||||| | || | || | || || | || | |||| ||||| | Sbjct 178545 AATCCTCTCCACCCAAGTGGGTGTCCCCGGCTGTGGCCTTAACCTCAAAAATCCCATCAT 178604 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC 518149 | | | || | | |||||| || || ||||||| |||||| || | |||| || Sbjct 178605 CTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTC 178664 Query 518150 ATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 | || || | || ||| | | ||| ||||| |||| ||||||||||| |||||||| Sbjct 178665 GCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATT 178722 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 |||||||| | ||||| ||||| || || |||||||| || ||||| || | || Sbjct 178723 GATAATTCTTAGCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTG 178782 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || || || || || || || ||||| || || |||| ||| || | || | | | Sbjct 178783 AGAGTCATTGAAGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAA 178842 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 ||| || || | ||||| ||| | | | ||| || || |||| || || || | Sbjct 178843 AGCCTCAGCAGTCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-A 178901 Query 518389 TTGCTTGGATT--CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 518446 |||| || | |||| || || || | | || || || | || || Sbjct 178902 AAGCTTTCTTTTCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATT 178960 Query 518447 ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 518506 |||| || ||||| ||||||||||||||| || | |||||||| | ||| || Sbjct 178961 ACTTGGAAAGGCCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCG 179020 Query 518507 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCT 518566 || | ||||| |||||||| | ||| || ||||| || || | || | ||||| Sbjct 179021 ATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCC 179080 Query 518567 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 ||||| || || || | || || ||||| || | || || || || ||||| || Sbjct 179081 GCATCGCCGATGAGCCGCTCGGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 179140 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACC 518658 || || || || || || || || || || || Sbjct 179141 CCCTGGTCGTTGGCGATGATCTCTACCTTGCC 179172 >seq4670 Length=477803 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||||||||||| ||||||||||| || ||| | || || ||| | Sbjct 417124 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 417065 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| | Sbjct 417064 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 417005 Query 635561 GATGCTAGTCCTAAA 635575 || ||| || |||| Sbjct 417004 GAAGCTTCTCATAAA 416990 >seq115 Length=644410 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || || Sbjct 185545 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 185486 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||| |||||||| || || || | || || || ||||| || Sbjct 185485 TTGAGTCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAG 185426 Query 518285 GCAGGAACAGTAATAACGGC 518304 ||||| || || | ||| || Sbjct 185425 GCAGGTACTGTGACAACAGC 185406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779977513796356