Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq3880 87.8 1e-12 >seq3880 Length=501567 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | |||||||| || ||||| ||||| | | ||| || | | ||||| Sbjct 220657 CCTCGTGCTGCACATGACACGTGTATTTCTGCTCCTCTCCAGAAGGCACCACCAGGGCTG 220716 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| | || ||||| ||||| || ||| | | | Sbjct 220717 CCCACTTCTGGAAGGTTCCATCTCCTGAAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 220776 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 || | | ||| ||||| ||||| || | | || |||||||| |||||||| Sbjct 220777 TCTGGTCCTC----CCCATTGCGCTGCCAGGTCAGTGAGATCTCCGCAGGGTAGAAGCCC 220832 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||||| || | || || || | |||||||| Sbjct 220833 AGGGCCCAGCACCTCAGGGTGACCTCACGGTCAG 220866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397664665715856