Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq6424 114 1e-20
seq11817 107 2e-18
seq5291 107 2e-18
>seq6424
Length=433988
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| ||||| || || | |||||| ||||| || | |||||||||||||||| ||| |
Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| |
Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 17648 CTACCACACGTTCTCC 17633
Score = 105 bits (116), Expect = 8e-18
Identities = 112/146 (77%), Gaps = 4/146 (3%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| || || ||||||| | ||| ||||||||| | || || ||| ||||||||
Sbjct 19349 TTAGAAGTCGGCATCCAACGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 19292
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| |
Sbjct 19291 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 19232
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
|||||||| ||||||||||||| |||
Sbjct 19231 TCCATAAAGTCAAATGGATTTTCTAC 19206
>seq11817
Length=981421
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | ||||| ||||| || | || ||||| ||||||||||| |||
Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| ||||| || ||||| || ||||| || || ||||| ||
Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 476816
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 476817 ACCACCCTTTCCCC 476830
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732
||||| || | ||||| ||| ||||||||||| ||||| |||||||| || || ||||
Sbjct 468557 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTCC 468616
Query 18733 ATAAAATCAAATGGATTTT 18751
||||||||||| |||||||
Sbjct 468617 ATAAAATCAAAGGGATTTT 468635
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404
|||||||||||||| || ||||||||||| ||||||||||| ||||| | || ||||
Sbjct 481670 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 481729
Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463
|||| || || ||||| | | | ||||| | | || ||| || |||||||| ||
Sbjct 481730 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 481788
>seq5291
Length=463539
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || | || || ||||| ||||| ||||| || ||
Sbjct 20689 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 20748
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| || || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 20749 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 20808
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 20809 TTTCTTATACCATA 20822
Score = 82.4 bits (90), Expect = 9e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
|| || | ||| || | || ||||| ||||| ||||||| ||||| || | | ||
Sbjct 40342 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 40401
Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719
|||||||||||| ||| ||| ||||| || || || || | |||||| | ||| |||
Sbjct 40402 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 40461
Query 48720 ATATATTGAGGTCTTTCA 48737
|| | ||| |||||||||
Sbjct 40462 ATGTGTTGTGGTCTTTCA 40479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561989169194640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |