Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq15027 132 4e-26 seq15438 96.9 3e-15 seq12394 87.8 1e-12 >seq15027 Length=2440082 Score = 132 bits (146), Expect = 4e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934 |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || || Sbjct 2417403 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 2417344 Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994 || |||||||| ||||||| ||||| | ||| || || ||||| || | |||||| Sbjct 2417343 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2417284 Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 |||||||| | || ||||||||| || || |||||||| Sbjct 2417283 AACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 2417246 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 29967 |||||||||||||| ||||| || || || |||||||| ||||||| ||||| | ||| Sbjct 2417106 TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGG 2417047 Query 29968 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027 || || ||||| || | |||||| ||||| || | || |||||| || || || ||| Sbjct 2417046 CAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCC 2416987 Query 30028 ATGAG 30032 ||||| Sbjct 2416986 ATGAG 2416982 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || || || | || Sbjct 2414763 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 2414704 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | |||| ||||||| |||| | ||||||| ||| |||||||| || Sbjct 2414703 CCCTTCAGCTCTGTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGGGACCCGTTGGCATC 2414644 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| || || || ||||| || || || || | ||| ||||| || Sbjct 2414643 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2414596 >seq15438 Length=947670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| | || ||||| | Sbjct 269398 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCCTT 269457 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| |||||| || Sbjct 269458 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAATT 269517 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259 ||| | ||| ||||||||| | |||| | | || | | || || || | Sbjct 269518 CTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTTCT 269577 Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318 ||| ||| || | ||||| | ||||| || ||||||| |||| ||||| ||| Sbjct 269578 GAGT------GGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGG-GACA 269630 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 269631 CAGCGACGATGCAGTTTAG 269649 >seq12394 Length=926646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 217629 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 217688 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 217689 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408532810060298