Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq15027 132 4e-26
seq15438 96.9 3e-15
seq12394 87.8 1e-12
>seq15027
Length=2440082
Score = 132 bits (146), Expect = 4e-26
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 29875 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 29934
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 2417403 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 2417344
Query 29935 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 29994
|| |||||||| ||||||| ||||| | ||| || || ||||| || | ||||||
Sbjct 2417343 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2417284
Query 29995 AACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|||||||| | || ||||||||| || || ||||||||
Sbjct 2417283 AACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 2417246
Score = 100 bits (110), Expect = 2e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 29967
|||||||||||||| ||||| || || || |||||||| ||||||| ||||| | |||
Sbjct 2417106 TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGG 2417047
Query 29968 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027
|| || ||||| || | |||||| ||||| || | || |||||| || || || |||
Sbjct 2417046 CAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCC 2416987
Query 30028 ATGAG 30032
|||||
Sbjct 2416986 ATGAG 2416982
Score = 82.4 bits (90), Expect = 6e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| || || || ||||||||||||||||| || || || || || | ||
Sbjct 2414763 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 2414704
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| || | |||| ||||||| |||| | ||||||| ||| |||||||| ||
Sbjct 2414703 CCCTTCAGCTCTGTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGGGACCCGTTGGCATC 2414644
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
||| || || || ||||| || || || || | ||| ||||| ||
Sbjct 2414643 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2414596
>seq15438
Length=947670
Score = 96.9 bits (106), Expect = 3e-15
Identities = 178/259 (69%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| |||| | || ||||| |
Sbjct 269398 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCCTT 269457
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| ||||| |||||||| |||||| ||
Sbjct 269458 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAATT 269517
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 112259
||| | ||| ||||||||| | |||| | | || | | || || || |
Sbjct 269518 CTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTTCT 269577
Query 112260 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACA 112318
||| ||| || | ||||| | ||||| || ||||||| |||| ||||| |||
Sbjct 269578 GAGT------GGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGG-GACA 269630
Query 112319 CGGCCACGATACCGTTCAG 112337
| || ||||| | ||| ||
Sbjct 269631 CAGCGACGATGCAGTTTAG 269649
>seq12394
Length=926646
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 217629 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 217688
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 217689 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408532810060298
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |