Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq11295 95.1 3e-15 >seq11295 Length=36635 Score = 95.1 bits (104), Expect = 3e-15 Identities = 191/276 (69%), Gaps = 17/276 (6%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || || | | Sbjct 33791 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 33732 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| | ||| ||| | ||| || || ||||||||||| | | Sbjct 33731 TAGATGTAGGAGCTGGTGTCACAGATGAAGATTCTAGAGGAAATGTTGGTGTTGTCCTGT 33672 Query 1078 TTAATTTTAGCGATAAG-CGTTTTCATATTTCAAGA--GGTGATAGGATTGCTCAGTTAA 1134 |||||||| || | || ||||| | |||| | |||||| | ||||| ||| | | Sbjct 33671 TTAATTTTGGCAAAGAGACGTTT---GAAGTCAAAAAGGGTGATCGAATTGCACAGCTCA 33615 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC---CTTAGAGGATTC 1189 |||||| || || | |||| | ||| |||||| ||| ||| ||| | || | Sbjct 33614 TTTGTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTACATGACAC 33561 Query 1190 GGAAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||| |||| | ||| ||||| || || ||||| Sbjct 33560 TGAAAGGCGTTCAGGAGGGTTTGGTTCCACTGGAAG 33525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138653560834056