Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq15871 96.9 3e-15
seq6202 96.9 3e-15
seq7844 91.5 1e-13
>seq15871
Length=707613
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || ||||| || || ||||| || | | || | |||| |||| ||
Sbjct 27170 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 27229
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| ||||| | ||| || || || || ||||||||||| ||||| || ||
Sbjct 27230 TTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTC 27289
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | ||||| || ||||||| ||||| || ||
Sbjct 27290 CCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTG 27349
Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472
| || |||||||| |||||||| ||
Sbjct 27350 AGGGTCTTTACAAAGATCTGCATTGT 27375
>seq6202
Length=441370
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 3263 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 3204
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 3203 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 3144
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 3143 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 3084
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 3083 AGGGTCTTCACGAAGATCTGCAT 3061
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 3491 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 3432
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 3431 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 3372
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 3371 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 3312
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 3311 AGGGTCTTCACGAAGATCTGCAT 3289
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 3719 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 3660
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 3659 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 3600
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 3599 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 3540
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 3539 AGGGTCTTCACGAAGATCTGCAT 3517
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 3947 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 3888
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 3887 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 3828
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 3827 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 3768
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 3767 AGGGTCTTCACGAAGATCTGCAT 3745
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 4175 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 4116
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 4115 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 4056
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 4055 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 3996
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 3995 AGGGTCTTCACGAAGATCTGCAT 3973
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 4403 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 4344
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 4343 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 4284
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 4283 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 4224
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 4223 AGGGTCTTCACGAAGATCTGCAT 4201
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 4631 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 4572
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 4571 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 4512
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 4511 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 4452
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 4451 AGGGTCTTCACGAAGATCTGCAT 4429
>seq7844
Length=401405
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 263112 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 263053
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 263052 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 262993
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || || |||| || ||||||||
Sbjct 262992 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 262933
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || || |||||
Sbjct 262932 AGGGTCTTCACGAAGATTTGCAT 262910
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | | ||| | | |||| |||| |||
Sbjct 263340 TGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 263281
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| || || || ||||||||||| ||||| || || ||
Sbjct 263280 TTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTG 263221
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | |||||| | ||||| || | |||| || ||||||||
Sbjct 263220 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTC 263161
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 263160 AGGGTCTTCACGAAGATCTGCAT 263138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396196170498282
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