Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 178 2e-39
seq16250 136 7e-27
seq2 96.9 6e-15
>seq2969
Length=528806
Score = 178 bits (196), Expect = 2e-39
Identities = 185/243 (76%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| | || ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 448759 AGCAGTTGGCAGCCATTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 448818
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | || || |||||||| || ||||| || | |||||| ||||||
Sbjct 448819 TCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGTTCTCCGCCTTGAGTGTCTTCACC 448878
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 448879 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 448938
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| ||
Sbjct 448939 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 448998
Query 241625 GAC 241627
|||
Sbjct 448999 GAC 449001
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Plus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | || || |||||||| |||||||
Sbjct 448796 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGT 448855
Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 448856 TCTCCGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 448910
>seq16250
Length=1268205
Score = 136 bits (150), Expect = 7e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 201296 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 201355
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | ||||||| ||||||||||||||| || |||| |||||| |||||
Sbjct 201356 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 201415
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || || |||||
Sbjct 201416 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGACGCTTGCGCTCTGCCTTA 201475
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| || || ||||||||||| || |||
Sbjct 201476 ATGCGCTCTTGCGTGTCCATGTCGATGGGCGAC 201508
>seq2
Length=4464411
Score = 96.9 bits (106), Expect = 6e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||||||||| | ||||| || | ||||| |||| |||
Sbjct 4208722 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 4208781
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 4208782 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 4208841
Query 241619 ATCGGAGA 241626
|| || ||
Sbjct 4208842 ATGGGGGA 4208849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931334546531840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |