Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq11817 102 2e-16
seq6424 91.5 3e-13
>seq11817
Length=981421
Score = 102 bits (112), Expect = 2e-16
Identities = 101/128 (79%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939
|| |||| ||||||||||||||||| || || || ||| || || ||||| || || |
Sbjct 476823 GGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 476764
Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998
||||||| ||| | ||| |||| ||||||||| || |||||||| ||||||||||||
Sbjct 476763 TCTGGCTAAAGAA-AAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTCATCAGC 476705
Query 25999 AGGGACGA 26006
|| || ||
Sbjct 476704 AGAGATGA 476697
>seq6424
Length=433988
Score = 91.5 bits (100), Expect = 3e-13
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
||||||||||||| || ||||| |||||||| || |||||| |||||| | || ||||
Sbjct 17643 TGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCAATATTCT 17702
Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
|||||||| | | | |||| ||||| || || |||||||| || || || |||||
Sbjct 17703 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 17761
Query 26002 GACGAGG 26008
|| ||||
Sbjct 17762 GATGAGG 17768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928647118605440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |