Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11817 102 2e-16 seq6424 91.5 3e-13 >seq11817 Length=981421 Score = 102 bits (112), Expect = 2e-16 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| ||||||||||||||||| || || || ||| || || ||||| || || | Sbjct 476823 GGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 476764 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| ||||||||| || |||||||| |||||||||||| Sbjct 476763 TCTGGCTAAAGAA-AAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTCATCAGC 476705 Query 25999 AGGGACGA 26006 || || || Sbjct 476704 AGAGATGA 476697 >seq6424 Length=433988 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 ||||||||||||| || ||||| |||||||| || |||||| |||||| | || |||| Sbjct 17643 TGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCAATATTCT 17702 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 17703 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 17761 Query 26002 GACGAGG 26008 || |||| Sbjct 17762 GATGAGG 17768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928647118605440