Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq8872 118 7e-21
seq10972 100 2e-15
seq5002 96.9 2e-14
seq115 96.9 2e-14
seq8498 91.5 1e-12
seq2002 87.8 1e-11
seq1447 87.8 1e-11
seq13361 86.0 4e-11
>seq8872
Length=1380361
Score = 118 bits (130), Expect = 7e-21
Identities = 354/538 (66%), Gaps = 9/538 (2%)
Strand=Plus/Plus
Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445
|| || ||||||||||||||||| || || || |||| || ||| ||||| | |||
Sbjct 972118 AAGGTGGAAATAATTGCCAATGATCAGGGGAACTGAACCACCCCAAGCTATGTCACCTTT 972177
Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505
||| | || ||| | || | |||||||| || | |||| || |||||
Sbjct 972178 ACTAATACCAAACGATTGATCAGTGATGCTGCAAAGAACCAAGTCACAATGAATCCCACC 972237
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
|| || |||||||||| ||| | | | ||| | | ||| ||||| | ||||||
Sbjct 972238 AACACAGTTTTTGATGCCAAACAACTTAGTGGATGAAGATTTAATGATGCTGTTGTCCAG 972297
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625
||||||||| |||||||| || | |||| ||||| || ||| | ||| | | ||
Sbjct 972298 TCTGATATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 972357
Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682
| |||||| | || || || ||| | |||| | | || | | || || |||||
Sbjct 972358 GTAGAATACAAG--GGGGAGAC-AAAGAGTTTTGATCAAGAGGAGGTGTCATCCATGGTC 972414
Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGT 474741
| | || | ||| ||| | | | | ||||| |||| || || | || ||
Sbjct 972415 CTGACAAAGAGGAAGGAAATCACAGAAGCCTGCCTTGG-GAAGACTGTTACCAACGCTGT 972473
Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801
| || || || || || |||||||| ||||| ||||| || || |||||||| ||||
Sbjct 972474 TGTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCCACCAAAGATGCTGGAAC 972533
Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861
||||| |||| | ||| | | || || | |||| |||| || || || | ||| ||
Sbjct 972534 TATTGC-TGTCTCAGTGTACTTAGAATCATCAGTGAAACAACTGCTGCTGCTCCTGCCTA 972592
Query 474862 TGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919
||| | || || || || ||| |||||| | |||||||||| || |||
Sbjct 972593 TGGCTTAGACAAAAAGGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTGGGTGGT 972650
Score = 111 bits (122), Expect = 1e-18
Identities = 282/422 (67%), Gaps = 9/422 (2%)
Strand=Plus/Plus
Query 475763 TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCT 475822
|| ||||| ||| | |||||| | || | || || | ||| ||| |||||||||| ||
Sbjct 973078 TTCAATGGGAAAGAATTAAATAAGAGCATCAACCCCGGTGAGGCTCTTGCATATGGTGCA 973137
Query 475823 GCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATA-TTGTACT 475881
|||||||| | ||| ||||| || || | || | |||| | || | |||
Sbjct 973138 GCTGTCCAGGTAGCCATTTTTTCTGGAGA--CAAATCTGAAAATGTTCAAGACTTGCTGC 973195
Query 475882 TGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATC 475940
||||| | || ||||| ||||| | || ||||||| | ||| || | |||||| |
Sbjct 973196 TGTTGGATGTCACTCCTCTTTCCCTTGGAATTGAAACCGCTGGTGGAGTCATGACTGTCC 973255
Query 475941 TTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTT-CCACTTATTCT 475999
| | ||| || | | || || | |||| | || ||| |||| || |||
Sbjct 973256 TCAAGCACA---ATGCAACCATTCC-TACAAAGCAGACGCAGACTTTCACCACCTACTCT 973311
Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT 476059
|| || || | |||| ||| || | | || |||||| ||| | || || |||
Sbjct 973312 GACAACCAGCCTGGTGTACTCATTCAGGTTTATGTAGGTGAGCGAACCATGACCAAGGAT 973371
Query 476060 AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCT 476119
| ||| | || | ||| | || ||| || |||||||| ||| | || ||||||
Sbjct 973372 AGCAACTTGCCTGCCAAATTTGAACTCACAGGCATACCTCCTGCCCCCTGTGGTGTTCCT 973431
Query 476120 CAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|| || ||||| ||||||||||||||||| ||||| ||||| ||||| ||||| |||
Sbjct 973432 CAGATGGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGAT 973491
Query 476180 AA 476181
||
Sbjct 973492 AA 973493
>seq10972
Length=1569106
Score = 100 bits (110), Expect = 2e-15
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || || | ||| || ||||||||||||||||||||
Sbjct 1317814 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 1317755
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| || ||| ||| || ||||| | | || || || |||||
Sbjct 1317754 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTAAT 1317695
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| |||||||| ||
Sbjct 1317694 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 1317662
>seq5002
Length=2202687
Score = 96.9 bits (106), Expect = 2e-14
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | ||| | || ||| || |||||||| || |
Sbjct 353090 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCACGT 353149
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 353150 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 353209
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 353210 GCTGTGGATAA 353220
>seq115
Length=644410
Score = 96.9 bits (106), Expect = 2e-14
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | ||| | || ||| || |||||||| || |
Sbjct 186850 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCACGT 186909
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 186910 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 186969
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 186970 GCTGTGGATAA 186980
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| | || || || || |||||| | ||||| || | || ||
Sbjct 184575 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTTTTCCAGCACGGAAA 184634
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| ||||||||||||||||| || || || |||| || ||| ||||| | |||||
Sbjct 184635 GGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTAC 184694
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAA 474480
||| || |||| | || || |||||||| ||
Sbjct 184695 TGATACCGAACGATTGATCGGTGATGCTGCAAA 184727
>seq8498
Length=279317
Score = 91.5 bits (100), Expect = 1e-12
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || || | ||| || ||||||||||||||||||||
Sbjct 98867 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 98808
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| || ||| ||| || ||||| | | || || || || ||
Sbjct 98807 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 98748
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| || ||||| ||
Sbjct 98747 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 98715
>seq2002
Length=2058770
Score = 87.8 bits (96), Expect = 1e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
|| ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || |||||
Sbjct 405582 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 405523
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
|||||||| |||| ||||| || | ||||| | | || || ||||| ||
Sbjct 405522 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 405470
>seq1447
Length=2301054
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || | | ||| || ||||||||||||||||||||
Sbjct 2079878 ATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTT 2079937
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| || ||| ||| || ||||| | | || | | || || ||
Sbjct 2079938 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGAT 2079997
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || | || ||||| |||||||| ||
Sbjct 2079998 GGTCTTCCCCATCAGGGTCTTCACGAAAATCTG 2080030
>seq13361
Length=1652743
Score = 86.0 bits (94), Expect = 4e-11
Identities = 113/155 (73%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || || | ||| | ||||||||||||||||||||
Sbjct 1224068 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCCTT 1224127
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG--TGAAGTTTCAAGGGTA 480734
|| || ||||| || ||| ||| || |||| | | | ||| ||||| ||
Sbjct 1224128 ATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGGGGGCTTGA--CCTCAAGAGTG 1224185
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || | || ||||| |||||||| ||
Sbjct 1224186 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTG 1224220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267448872249848
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