Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8872 118 7e-21 seq10972 100 2e-15 seq5002 96.9 2e-14 seq115 96.9 2e-14 seq8498 91.5 1e-12 seq2002 87.8 1e-11 seq1447 87.8 1e-11 seq13361 86.0 4e-11 >seq8872 Length=1380361 Score = 118 bits (130), Expect = 7e-21 Identities = 354/538 (66%), Gaps = 9/538 (2%) Strand=Plus/Plus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || ||||||||||||||||| || || || |||| || ||| ||||| | ||| Sbjct 972118 AAGGTGGAAATAATTGCCAATGATCAGGGGAACTGAACCACCCCAAGCTATGTCACCTTT 972177 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| | || ||| | || | |||||||| || | |||| || ||||| Sbjct 972178 ACTAATACCAAACGATTGATCAGTGATGCTGCAAAGAACCAAGTCACAATGAATCCCACC 972237 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||||||| ||| | | | ||| | | ||| ||||| | |||||| Sbjct 972238 AACACAGTTTTTGATGCCAAACAACTTAGTGGATGAAGATTTAATGATGCTGTTGTCCAG 972297 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||||||| |||||||| || | |||| ||||| || ||| | ||| | | || Sbjct 972298 TCTGATATGAAACATTGGCCCTTCATGGTGGCAAATGATGCTGGCAGACCTAAGGTTTAA 972357 Query 474626 G--CAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTT 474682 | |||||| | || || || ||| | |||| | | || | | || || ||||| Sbjct 972358 GTAGAATACAAG--GGGGAGAC-AAAGAGTTTTGATCAAGAGGAGGTGTCATCCATGGTC 972414 Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | | || | ||| ||| | | | | ||||| |||| || || | || || Sbjct 972415 CTGACAAAGAGGAAGGAAATCACAGAAGCCTGCCTTGG-GAAGACTGTTACCAACGCTGT 972473 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 | || || || || || |||||||| ||||| ||||| || || |||||||| |||| Sbjct 972474 TGTCACAGTACCTGCCTACTTTAATGACTCTCAGCGTCAGGCCACCAAAGATGCTGGAAC 972533 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 ||||| |||| | ||| | | || || | |||| |||| || || || | ||| || Sbjct 972534 TATTGC-TGTCTCAGTGTACTTAGAATCATCAGTGAAACAACTGCTGCTGCTCCTGCCTA 972592 Query 474862 TGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 ||| | || || || || ||| |||||| | |||||||||| || ||| Sbjct 972593 TGGCTTAGACAAAAAGGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTGGGTGGT 972650 Score = 111 bits (122), Expect = 1e-18 Identities = 282/422 (67%), Gaps = 9/422 (2%) Strand=Plus/Plus Query 475763 TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCT 475822 || ||||| ||| | |||||| | || | || || | ||| ||| |||||||||| || Sbjct 973078 TTCAATGGGAAAGAATTAAATAAGAGCATCAACCCCGGTGAGGCTCTTGCATATGGTGCA 973137 Query 475823 GCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATA-TTGTACT 475881 |||||||| | ||| ||||| || || | || | |||| | || | ||| Sbjct 973138 GCTGTCCAGGTAGCCATTTTTTCTGGAGA--CAAATCTGAAAATGTTCAAGACTTGCTGC 973195 Query 475882 TGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATC 475940 ||||| | || ||||| ||||| | || ||||||| | ||| || | |||||| | Sbjct 973196 TGTTGGATGTCACTCCTCTTTCCCTTGGAATTGAAACCGCTGGTGGAGTCATGACTGTCC 973255 Query 475941 TTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTT-CCACTTATTCT 475999 | | ||| || | | || || | |||| | || ||| |||| || ||| Sbjct 973256 TCAAGCACA---ATGCAACCATTCC-TACAAAGCAGACGCAGACTTTCACCACCTACTCT 973311 Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT 476059 || || || | |||| ||| || | | || |||||| ||| | || || ||| Sbjct 973312 GACAACCAGCCTGGTGTACTCATTCAGGTTTATGTAGGTGAGCGAACCATGACCAAGGAT 973371 Query 476060 AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCT 476119 | ||| | || | ||| | || ||| || |||||||| ||| | || |||||| Sbjct 973372 AGCAACTTGCCTGCCAAATTTGAACTCACAGGCATACCTCCTGCCCCCTGTGGTGTTCCT 973431 Query 476120 CAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGAT 476179 || || ||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct 973432 CAGATGGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGAT 973491 Query 476180 AA 476181 || Sbjct 973492 AA 973493 >seq10972 Length=1569106 Score = 100 bits (110), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | ||| || |||||||||||||||||||| Sbjct 1317814 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 1317755 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| || ||||| | | || || || ||||| Sbjct 1317754 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTAAT 1317695 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| |||||||| || Sbjct 1317694 GGTCTTCCCCGTCAGGGTCTTCACGAAAATCTG 1317662 >seq5002 Length=2202687 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || |||||||| || | Sbjct 353090 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCACGT 353149 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 353150 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 353209 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 353210 GCTGTGGATAA 353220 >seq115 Length=644410 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || |||||||| || | Sbjct 186850 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCACGT 186909 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| || Sbjct 186910 GGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 186969 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 186970 GCTGTGGATAA 186980 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || || |||||| | ||||| || | || || Sbjct 184575 TGCAGTTGGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTTTTCCAGCACGGAAA 184634 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||||||||||||||| || || || |||| || ||| ||||| | ||||| Sbjct 184635 GGTGGAAATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTAC 184694 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 ||| || |||| | || || |||||||| || Sbjct 184695 TGATACCGAACGATTGATCGGTGATGCTGCAAA 184727 >seq8498 Length=279317 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | ||| || |||||||||||||||||||| Sbjct 98867 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 98808 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| || ||||| | | || || || || || Sbjct 98807 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 98748 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || ||||| || Sbjct 98747 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 98715 >seq2002 Length=2058770 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 405582 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 405523 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || | ||||| | | || || ||||| || Sbjct 405522 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 405470 >seq1447 Length=2301054 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || | | ||| || |||||||||||||||||||| Sbjct 2079878 ATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTT 2079937 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| || ||||| | | || | | || || || Sbjct 2079938 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGAT 2079997 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || | || ||||| |||||||| || Sbjct 2079998 GGTCTTCCCCATCAGGGTCTTCACGAAAATCTG 2080030 >seq13361 Length=1652743 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | ||| | |||||||||||||||||||| Sbjct 1224068 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCCTT 1224127 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG--TGAAGTTTCAAGGGTA 480734 || || ||||| || ||| ||| || |||| | | | ||| ||||| || Sbjct 1224128 ATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGGGGGCTTGA--CCTCAAGAGTG 1224185 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || | || ||||| |||||||| || Sbjct 1224186 ATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTG 1224220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267448872249848