Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq13061 385 6e-102 seq8866 159 4e-34 seq9490 98.7 1e-15 >seq13061 Length=872146 Score = 385 bits (426), Expect = 6e-102 Identities = 679/984 (69%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || || Sbjct 477619 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGGGTCGAATTTGTTGGC 477678 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||| || ||| |||| ||||| ||||| || Sbjct 477679 AAACAAGTGGTGCACGCGCAACAG---CCAGTTCAAGTCACCGGCTCCGAAAACGCACAC 477735 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| ||| |||||||| | || || || | ||||| ||||| Sbjct 477736 GGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 477795 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| |||||||||||||| || |||||||| || | Sbjct 477796 AAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAGACGTGTCGTACTTATG 477855 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || |||| || | ||| | |||||||| || | || Sbjct 477856 GCTCAAGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 477915 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | || Sbjct 477916 GTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 477975 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || || || || || | ||| | Sbjct 477976 CACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTTCCTGAAAAGAGAGGTGT 478035 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || ||||| | || | ||| ||||| | Sbjct 478036 TTCAAGAGGTGGA-TGTATTTTGTCAGTTCCCGTGTTGGTCAGCTTTCCATTCACGACTT 478094 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | | || || | |||||| | ||||| ||||| ||| Sbjct 478095 CATAATGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTGT 478154 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| | | | || |||| | |||| || || ||||| || || | ||||| | Sbjct 478155 TCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 478214 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCT 160708 | | ||||| | ||||||| ||||||||| | || ||| || || || |||| Sbjct 478215 CCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA--TCCTGGAGAGGTCCTG 478272 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | Sbjct 478273 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATACACCACGCTCTCCAGCTG 478332 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 |||||| |||||||| ||| ||| || || | || ||||| | || || ||| Sbjct 478333 ACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCACAGCTGCAGCCAAAAACGA 478392 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | || | ||| ||||||||| | ||||| | ||||||||| |||||||||||| Sbjct 478393 TTCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTCTGAGGCATGTAGATGGCCCT 478452 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||||| Sbjct 478453 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAAA 478512 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | ||| || ||| || | | | | || || ||| ||||||| ||| || | Sbjct 478513 CTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAAGC 478572 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| || || Sbjct 478573 ACAATCACCAGTCATGTTTATGTA 478596 >seq8866 Length=226872 Score = 159 bits (176), Expect = 4e-34 Identities = 217/300 (72%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | ||| || |||| || || || || ||||| |||||||| || Sbjct 77534 AGAGTGAGGCAGGCTACTCCTGAGCTCTTCCCAGAGCCAAAGGTGTTAAAGAGGCATTTG 77593 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || ||||||| ||||| |||||||| || | | |||||| ||| ||| Sbjct 77594 TAACACGCCTCATCCTCCAAGGTGGCGTTCCAAAAGGTGATGGCTGAGTTCGTGAGTCCC 77653 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | |||||| ||||| || || || || | ||| || |||||||| || ||||||||| Sbjct 77654 AGCTGCGTGATGTTGACCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 77713 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| | || ||||| || || |||| | Sbjct 77714 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGACTTTTTGCCATGTCACAATCAAA 77773 Query 168393 ACCTCTT---TATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || |||| || || ||||| || ||||| | ||||| || |||||||||||| || Sbjct 77774 ACTTCTTGGGGAT--GT-TGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGTGCT 77830 >seq9490 Length=160608 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 153393 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 153452 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 153453 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 153512 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 153513 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 153572 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 153573 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 153632 Query 176422 TACA 176425 | || Sbjct 153633 TGCA 153636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577096353323760