Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8498 123 5e-23 seq15871 105 1e-17 seq10972 104 5e-17 seq1447 96.9 7e-15 seq10398 86.0 1e-11 >seq8498 Length=279317 Score = 123 bits (136), Expect = 5e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||| | | ||| | || |||| ||| | ||| | ||| ||| || || || || |||| Sbjct 98939 ACCATCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 98881 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| | Sbjct 98880 ACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 98821 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 98820 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 98761 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 98760 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709 >seq15871 Length=707613 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || ||| Sbjct 27143 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 27202 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| || ||||| || || || Sbjct 27203 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGG 27262 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| |||||||| || || ||||| || | || | || Sbjct 27263 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 27322 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | || || | ||| ||||||||| Sbjct 27323 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 27373 >seq10972 Length=1569106 Score = 104 bits (114), Expect = 5e-17 Identities = 168/240 (70%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | || | || |||| ||| | ||| | ||| ||| || || || || |||| Sbjct 1317894 ACCACCACGAATTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 1317836 Query 192368 ATAATGTTCGTTCAT--------CATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 | || || ||| ||| | |||| ||| || ||||||||||| | ||| || || Sbjct 1317835 ACAAAGTACGTCCATACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 1317776 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 ||||| || |||||||| ||||| || || || |||||||| ||| | ||| || Sbjct 1317775 GTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 1317716 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||| || || ||||||||||| || || || | || || | || |||||||| || Sbjct 1317715 GGGTTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 1317656 >seq1447 Length=2301054 Score = 96.9 bits (106), Expect = 7e-15 Identities = 165/236 (70%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGT---AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 || |||||| | || || || |||| ||| | ||| ||| ||| || || || || Sbjct 2079802 TAGCACCTCCATGAAGTCTCAACACTAGATGAAGAGTGAACTCCTTTTGA-ATGTTGTAG 2079860 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || || |||| |||| ||| || ||||||||||| ||| || || ||| Sbjct 2079861 TCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCA 2079920 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||||||| ||| | ||| || | | Sbjct 2079921 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGT 2079980 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | ||||| ||||| || || | | || || | || |||||||| || Sbjct 2079981 TCAACCTTGAGAGTGATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 2080036 >seq10398 Length=86818 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || || ||||| || | |||||| | Sbjct 65899 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCT 65958 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || ||| |||| | | | |||||| | ||||| || ||||| | Sbjct 65959 TATCCTGGATCTTGGCCTTTGCATTTTCTGTTGTATCTGAGGTCTCTACCTCAAGAGTGA 66018 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| || | || | || || || || |||||||| || Sbjct 66019 TGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 66058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984265239995100