Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq8498 123 5e-23
seq15871 105 1e-17
seq10972 104 5e-17
seq1447 96.9 7e-15
seq10398 86.0 1e-11
>seq8498
Length=279317
Score = 123 bits (136), Expect = 5e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||| | | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||
Sbjct 98939 ACCATCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 98881
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| |
Sbjct 98880 ACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 98821
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 98820 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 98761
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || ||||| ||||| || || || | || || | ||| |||||||| ||
Sbjct 98760 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709
>seq15871
Length=707613
Score = 105 bits (116), Expect = 1e-17
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| || || | || | || | ||| | |||||| ||| || || |||
Sbjct 27143 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 27202
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| ||||| || |||||||| || ||||| || || ||
Sbjct 27203 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGG 27262
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || |||||||| |||||||| || || ||||| || | || | ||
Sbjct 27263 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 27322
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| |||||||||||||| | || || | ||| |||||||||
Sbjct 27323 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 27373
>seq10972
Length=1569106
Score = 104 bits (114), Expect = 5e-17
Identities = 168/240 (70%), Gaps = 10/240 (4%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | || | || |||| ||| | ||| | ||| ||| || || || || ||||
Sbjct 1317894 ACCACCACGAATTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 1317836
Query 192368 ATAATGTTCGTTCAT--------CATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419
| || || ||| ||| | |||| ||| || ||||||||||| | ||| || ||
Sbjct 1317835 ACAAAGTACGTCCATACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 1317776
Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479
||||| || |||||||| ||||| || || || |||||||| ||| | ||| ||
Sbjct 1317775 GTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 1317716
Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| ||| || || ||||||||||| || || || | || || | || |||||||| ||
Sbjct 1317715 GGGTTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 1317656
>seq1447
Length=2301054
Score = 96.9 bits (106), Expect = 7e-15
Identities = 165/236 (70%), Gaps = 5/236 (2%)
Strand=Plus/Plus
Query 192308 TACCACCTCTAAGACGT---AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363
|| |||||| | || || || |||| ||| | ||| ||| ||| || || || ||
Sbjct 2079802 TAGCACCTCCATGAAGTCTCAACACTAGATGAAGAGTGAACTCCTTTTGA-ATGTTGTAG 2079860
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
||||| || || || |||| |||| ||| || ||||||||||| ||| || || |||
Sbjct 2079861 TCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCA 2079920
Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483
|| || |||||||| ||||| || || || |||||||| ||| | ||| || | |
Sbjct 2079921 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGT 2079980
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || | ||||| ||||| || || | | || || | || |||||||| ||
Sbjct 2079981 TCAACCTTGAGAGTGATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 2080036
>seq10398
Length=86818
Score = 86.0 bits (94), Expect = 1e-11
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||| ||| || ||||||||||| | ||| || || ||||| || | |||||| |
Sbjct 65899 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCT 65958
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || ||| |||| | | | |||||| | ||||| || ||||| |
Sbjct 65959 TATCCTGGATCTTGGCCTTTGCATTTTCTGTTGTATCTGAGGTCTCTACCTCAAGAGTGA 66018
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|||| || | || | || || || || |||||||| ||
Sbjct 66019 TGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 66058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984265239995100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |