Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq10972 116 7e-21
seq15871 87.8 3e-12
>seq10972
Length=1569106
Score = 116 bits (128), Expect = 7e-21
Identities = 175/248 (71%), Gaps = 8/248 (3%)
Strand=Plus/Minus
Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892
|||| || |||||| | || || || |||| ||| | ||| | ||| || ||| ||
Sbjct 1317903 TTTCTTAGCACCACCACGAATTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTT 1317844
Query 171893 ATAATCTGATAAAG-------AT-CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAAT 171944
|| || || |||| || ||| | || |||| ||| || |||||||| || | |
Sbjct 1317843 GTAGTCAGACAAAGTACGTCCATACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGT 1317784
Query 171945 CTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA 172004
|| || |||||||| || |||||||| ||||| || || || |||||||| |||
Sbjct 1317783 CTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATT 1317724
Query 172005 GTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATC 172064
||||| || | ||| || || ||||||||||| || || || | || || | ||| |||
Sbjct 1317723 GTATCCGAGGGTTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATC 1317664
Query 172065 TGCATTTT 172072
||||| ||
Sbjct 1317663 TGCATCTT 1317656
>seq15871
Length=707613
Score = 87.8 bits (96), Expect = 3e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| |||||||| || || | || | || | ||| | |||||| || || || ||
Sbjct 27143 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 27202
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || |||| ||||| || ||||| || || ||||| ||||| ||
Sbjct 27203 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGG 27262
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| |||||||| || || ||||| || || || | ||
Sbjct 27263 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 27322
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || ||||| |||||||||||||| | || || | || |||||||||
Sbjct 27323 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 27373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904943364430800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |