Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10972 116 7e-21 seq15871 87.8 3e-12 >seq10972 Length=1569106 Score = 116 bits (128), Expect = 7e-21 Identities = 175/248 (71%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | || || || |||| ||| | ||| | ||| || ||| || Sbjct 1317903 TTTCTTAGCACCACCACGAATTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTT 1317844 Query 171893 ATAATCTGATAAAG-------AT-CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAAT 171944 || || || |||| || ||| | || |||| ||| || |||||||| || | | Sbjct 1317843 GTAGTCAGACAAAGTACGTCCATACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGT 1317784 Query 171945 CTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA 172004 || || |||||||| || |||||||| ||||| || || || |||||||| ||| Sbjct 1317783 CTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATT 1317724 Query 172005 GTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATC 172064 ||||| || | ||| || || ||||||||||| || || || | || || | ||| ||| Sbjct 1317723 GTATCCGAGGGTTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATC 1317664 Query 172065 TGCATTTT 172072 ||||| || Sbjct 1317663 TGCATCTT 1317656 >seq15871 Length=707613 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||| | |||||| || || || || Sbjct 27143 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 27202 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| ||||| || ||||| || || ||||| ||||| || Sbjct 27203 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGG 27262 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| |||||||| || || ||||| || || || | || Sbjct 27263 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 27322 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| |||||||||||||| | || || | || ||||||||| Sbjct 27323 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 27373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904943364430800