Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq15871 125 6e-24
seq8498 123 2e-23
seq11172 105 5e-18
seq10972 100 2e-16
seq1447 93.3 3e-14
>seq15871
Length=707613
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || |
Sbjct 26690 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 26749
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || || ||||| || ||| | ||||| || ||||| || || ||
Sbjct 26750 AGGGTACGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 26809
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| |||||||||||||| | || |||||| | || | |||||| | || ||
Sbjct 26810 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 26869
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || ||||| | ||| || || || ||||||||
Sbjct 26870 TCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| || |||| || || ||||| ||||| || ||||| || || | | |||||| |
Sbjct 26930 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 26989
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || ||||| || ||| | ||||| || ||||| || || || || |||||||||
Sbjct 26990 TCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 27049
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || |||||| | || | |||||| | || || || || || ||
Sbjct 27050 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 27109
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | ||| || || || ||||||||
Sbjct 27110 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 27144
>seq8498
Length=279317
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | ||| || |||
Sbjct 98924 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATC 98865
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||||||||| || || ||||| || || || ||
Sbjct 98864 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 98805
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || || ||||| || ||
Sbjct 98804 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 98745
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | ||| || ||||| |||||||| ||
Sbjct 98744 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709
>seq11172
Length=1040880
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || | |||
Sbjct 4337 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 4396
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||| | | |||| ||||||||| || || ||||| || || || ||
Sbjct 4397 TTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 4456
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || | || || || ||||| || ||
Sbjct 4457 CTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGT 4516
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| ||||| | ||| || || || |||||||| ||
Sbjct 4517 CTTCCCAGTCAGGGTCTTCACGAAAATCTGCATCTT 4552
>seq10972
Length=1569106
Score = 100 bits (110), Expect = 2e-16
Identities = 157/224 (70%), Gaps = 8/224 (4%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATG-------GTG 29625
|| ||| | |||||| ||||| || ||||||||||| || || | ||| | |
Sbjct 1317879 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATA 1317820
Query 29626 CGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCC 29685
|| ||| || ||||| ||||||||| | |||| ||||||||| || || ||||| ||
Sbjct 1317819 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 1317760
Query 29686 TCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGA 29745
|| || || || | || || ||| |||||| || || || |||| || || |||
Sbjct 1317759 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 1317700
Query 29746 GTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || || || || | ||| || || || |||||||| ||
Sbjct 1317699 GTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 1317656
>seq1447
Length=2301054
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||| | || ||||||||||| || || | | || | |||
Sbjct 2079821 CAACACTAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 2079880
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||| ||||||||| || || ||||| || || || ||
Sbjct 2079881 TTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATC 2079940
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || | ||||| || ||
Sbjct 2079941 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGT 2080000
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || | | ||| || || || |||||||| ||
Sbjct 2080001 CTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 2080036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385139265330666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |