Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq15871 125 6e-24 seq8498 123 2e-23 seq11172 105 5e-18 seq10972 100 2e-16 seq1447 93.3 3e-14 >seq15871 Length=707613 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || | Sbjct 26690 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 26749 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 26750 AGGGTACGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 26809 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || |||||| | || | |||||| | || || Sbjct 26810 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 26869 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || ||||| | ||| || || || |||||||| Sbjct 26870 TCCAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| ||||| || ||||| || || | | |||||| | Sbjct 26930 CGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 26989 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | ||||| || ||||| || || || || ||||||||| Sbjct 26990 TCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 27049 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || |||||| | || | |||||| | || || || || || || Sbjct 27050 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 27109 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || |||||||| Sbjct 27110 GTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 27144 >seq8498 Length=279317 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | ||| || ||| Sbjct 98924 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATC 98865 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || ||||| || || || || Sbjct 98864 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 98805 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || ||||| || || Sbjct 98804 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 98745 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || ||||| |||||||| || Sbjct 98744 CTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 98709 >seq11172 Length=1040880 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || | ||| Sbjct 4337 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 4396 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||| | | |||| ||||||||| || || ||||| || || || || Sbjct 4397 TTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 4456 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | || || || ||||| || || Sbjct 4457 CTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGT 4516 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | ||| || || || |||||||| || Sbjct 4517 CTTCCCAGTCAGGGTCTTCACGAAAATCTGCATCTT 4552 >seq10972 Length=1569106 Score = 100 bits (110), Expect = 2e-16 Identities = 157/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATG-------GTG 29625 || ||| | |||||| ||||| || ||||||||||| || || | ||| | | Sbjct 1317879 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATA 1317820 Query 29626 CGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCC 29685 || ||| || ||||| ||||||||| | |||| ||||||||| || || ||||| || Sbjct 1317819 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 1317760 Query 29686 TCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGA 29745 || || || || | || || ||| |||||| || || || |||| || || ||| Sbjct 1317759 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 1317700 Query 29746 GTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || | ||| || || || |||||||| || Sbjct 1317699 GTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 1317656 >seq1447 Length=2301054 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||| | || ||||||||||| || || | | || | ||| Sbjct 2079821 CAACACTAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 2079880 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||| ||||||||| || || ||||| || || || || Sbjct 2079881 TTCCAGTTGCTTGCCAGCAAAGATCTGTCTTTGCTGCTCAGGAGGAATTCCTTCCTTATC 2079940 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || | ||||| || || Sbjct 2079941 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGAGTGATGGT 2080000 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || | | ||| || || || |||||||| || Sbjct 2080001 CTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 2080036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385139265330666