Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq8872 178 1e-38
seq8009 165 6e-35
seq4670 104 2e-16
seq115 100 2e-15
>seq8872
Length=1380361
Score = 178 bits (196), Expect = 1e-38
Identities = 905/1421 (64%), Gaps = 60/1421 (4%)
Strand=Plus/Minus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
||||| | |||| ||||| ||||| ||||||||||| | |||||| |||||||| ||
Sbjct 973493 TTATCCACAGCAGAGACATTGAGAATGCCATTGGCATCAATATCAAAAGTGACTTCCATC 973434
Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA-TT 281535
||||| || || | | ||||| || || ||| | | |||| || ||| | ||
Sbjct 973433 TGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAT-TTGGCAGGCAAGTT 973375
Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 281594
|||| || || | |||| ||||| | ||| || || |||| | ||| || |
Sbjct 973374 GCTATCCTTGGTCATGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACCAGGCTGGT 973316
Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCA 281653
| || || || || || || | |||| | | || |||||| |||| || |
Sbjct 973315 TGTCAGAGTAGGTGGTGAA-AGTCTGCGTCTGCTTTGTAGGAATGGTTGCATTGTGCTTG 973257
Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713
| | | ||||| | |||||||| ||||| | ||||| |||||||||||||||||
Sbjct 973256 AGGACA---GTCATGACTCCACCAGCGGTTTCAATTCCAAGGGAAAGAGGAGTGACATCC 973200
Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773
| || | | | ||||| |||||| | | ||| || ||| ||| | || | |
Sbjct 973199 AACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGAAAAAATGGCTACCTGGACA 973140
Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833
|| ||||||||||||| ||| ||| | || || | | | ||||| || ||| ||||||
Sbjct 973139 GCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTCTTTCCCATTG 973080
Query 281834 AAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATAC 281892
|| || | ||||||| ||| | ||| || || | | ||| || || || | ||
Sbjct 973079 AAGAAGTCCTGGAGAAGTT-TCTCAGTCTTGGGGATGTGGGTTGAGCCACCCACCGAGAC 973021
Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC--GGGT 281950
||| ||||| | ||| || || |||| || | ||| | | |||| || | ||||
Sbjct 973020 AATATCATGGATCTGAGACTTGTCCATCTTGGCATCTGA-AGGGCTTTCTCCATAAGGGT 972962
Query 281951 TCAAGA--CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008
|| | ||| | |||||||| | | | |||||| |||| | |||
Sbjct 972961 CCAGGGTGCCA---CAGAACAAGTCAGCATTCAATTCTTCAAATT--------GGAAGT- 972914
Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068
||| ||||||| | || ||||||| ||||| | | ||| || |
Sbjct 972913 TGA------------TTCCTTCATAGAAGGAATCAATCTCAATACTGGCTTGGGTGCTGG 972866
Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTT 282124
|||| || | || |||||| | ||| | | || || | | | || || |
Sbjct 972865 AAGAGAGAGTGCGCTTAGCAAGCTCAGAAACAGTATGGAGGCAACAGACAGCCCTCTTGT 972806
Query 282125 GCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--A 282182
|| |||| ||| | || | ||| |||||||| ||||||| | ||| | |
Sbjct 972805 TCTCCCTGAT----ATCCTTCTTGTGTTTGCTCTTGAACTCTTCAATGAA--ATGGTTGA 972752
Query 282183 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 282242
| | ||| | | ||||| || ||| |||| ||| | ||| | | || |
Sbjct 972751 CCTTGCCATTGGCGACGTCTTCTCCAGACAA----GTATCTCCAGCTATAGATTTGACCT 972696
Query 282243 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302
|| | |||||| ||| || | | | |||||| | |||||||||| |||||
Sbjct 972695 CAAAGATTCCATCCTCAGTAGTGAGGACTGACACATCAAAA-TGCCACCACCCAAATCAA 972637
Query 282303 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362
| || || ||||| | ||| | ||||| || | ||||| ||| ||||||||
Sbjct 972636 AGATCAGCACATTTCTCTCTGCTCCAACCTTTTTGTCTAAGCCATAGGCAGGAGCAGCAG 972577
Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422
|||||| |||| | || ||||| | ||| | ||| ||||||| |||| |||||||| |
Sbjct 972576 CAGTTGTTTCACTGATGATTCTAAGTACACTGAGA-CAGCAATAGTTCCAGCATCTTTGG 972518
Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482
|||| || | || || || ||||| || ||||| || || | ||| || | || ||
Sbjct 972517 TGGCCTGACGCTGAGAGTCATTAAAGTAGGCAGGTACTGTGACAACAGCGTTGGTAACAG 972458
Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542
|| |||| | || || ||| ||| | || | | | ||| ||||| | |
Sbjct 972457 TCTTCCCAAGGCAGGCTTCTGTGATTTCCTTCCTCTTTGTCAGGACCATGGATGACACCT 972398
Query 282543 GTTCTGGA-GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 282601
||| || || | | ||| | | ||| ||| ||||| || | ||| | |
Sbjct 972397 CCTCTTGATCAAAACTCTTTGTCTCCCCCTTG-TATTCTACTTAAACCTTAGGTCTGCCA 972339
Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661
|| |||| || | || ||||||| ||||||||| || || ||| ||||||
Sbjct 972338 GCATCATTTGCCACCATGAAGGGCCAATGTTTCATATCAGACTGGACAACAGCATCATTA 972279
Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721
|| || ||| | | | |||| |||||||||| || ||||| ||||| | || ||
Sbjct 972278 AATCTTCATCCACTAAGTTGTTTGGCATCAAAAACTGTGTTGGTGGGATTCATTGTGACT 972219
Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781
|| | || || ||||| | |||| ||| || | ||||| | ||||| |||
Sbjct 972218 TGGTTCTTTGCAGCATCACTGATCAATCGTTTGGTATTAGTAAAGGTGACATAGCTTGGG 972159
Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 282822
|| || | || || |||||||| ||||| ||||| || ||
Sbjct 972158 GTGGTTCAGTTCCCCTGATCATTGGCAATTATTTCCACCTT 972118
>seq8009
Length=358766
Score = 165 bits (182), Expect = 6e-35
Identities = 896/1412 (63%), Gaps = 24/1412 (2%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|| || ||||| ||||||||||||||||| | ||||| || || ||||| || || ||
Sbjct 177773 GCTGTTACATTGAGAATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACT 177832
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| || | || || ||||| || || || ||| ||||| || || || |
Sbjct 177833 CCCCTGGGTGCCGGAGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGA 177892
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
|| | | || ||||| | | ||||| || | | ||||| ||||| ||
Sbjct 177893 GTCATGGCCCTCTCGCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAG 177952
Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664
|| || || | |||| | | ||| || || || | ||| | | || | ||
Sbjct 177953 GTGGTGAAAA-TCTGTGTCTGCTTAGTGGGGATGGTGGAGTTGCGCTTGATTAGTACAGT 178011
Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724
||| | || || || || || ||||| | ||| || |||| || || | | | |
Sbjct 178012 CATGACTCCCCCTGCGGTCTCCAAACCTAAAGACAGGGGAGCCACGTCCAACAAAAGCAG 178071
Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784
| || | |||||| | | || | | ||| ||||| |||| ||||| |||||
Sbjct 178072 GTCCTGTACCTTTTCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATA 178131
Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 281843
||||| || ||||| || || | | | || || | |||||| || | | |||
Sbjct 178132 GGCAACTGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCTTG 178191
Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903
|| | | | |||||||| || |||| || || || ||||| ||||| ||||| |
Sbjct 178192 CAACAGCCTCTGA-ACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGA 178250
Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963
| | |||||||| || | |||| | | | || || || || || || | |
Sbjct 178251 TTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCC 178310
Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021
|||||| ||||| ||| | ||||| || ||||| || || || | || || ||
Sbjct 178311 TAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTC 178368
Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081
||| ||||| | | || |||| ||| | | | || || ||| || || | |
Sbjct 178369 AATGCCTTCATAAAGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCT 178428
Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCA 282137
|| || | || || || || | | | | | || |||| | ||| ||||
Sbjct 178429 CTTGGCCCTCTCGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG-- 178486
Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197
|| | |||| ||| |||||||| ||||| ||| | | ||||| | || ||||
Sbjct 178487 --TCCTTCTTATGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAA 178544
Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257
|||| || || ||||| | || | || | || || | || | |||| ||||| |
Sbjct 178545 AATCCTCTCCACCCAAGTGGGTGTCCCCGGCTGTGGCCTTAACCTCAAAAATCCCATCAT 178604
Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC 282316
| | | || | | |||||| || || ||||||| |||||| || | |||| ||
Sbjct 178605 CTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTC 178664
Query 282317 ATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375
| || || | || ||| | | ||| ||||| |||| ||||||||||| ||||||||
Sbjct 178665 GCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATT 178722
Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435
|||||||| | ||||| ||||| || || |||||||| || ||||| || | ||
Sbjct 178723 GATAATTCTTAGCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTG 178782
Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495
|| || || || || || || ||||| || || |||| || || | || | | |
Sbjct 178783 AGAGTCATTGAAGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAA 178842
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
||| || || | ||||| ||| | | | ||| || || |||| || ||| || |
Sbjct 178843 AGCCTCAGCAGTCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-A 178901
Query 282556 TTGCTTGGATT--CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613
|||| || | |||| || || || | | || || || | || ||
Sbjct 178902 AAGCTTTCTTTTCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATT 178960
Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673
|||| || |||||| ||||||||||||||| || | |||||||| | ||| ||
Sbjct 178961 ACTTGGAAAGGCCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCG 179020
Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733
|| | ||||| |||||||| | ||| || ||||| | || | || | |||||
Sbjct 179021 ATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCC 179080
Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793
||||| || || || | || || ||||| || | || || || || ||||| ||
Sbjct 179081 GCATCGCCGATGAGCCGCTCGGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 179140
Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACC 282825
|| || || || || || || || || || ||
Sbjct 179141 CCCTGGTCGTTGGCGATGATCTCTACCTTGCC 179172
>seq4670
Length=477803
Score = 104 bits (114), Expect = 2e-16
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| |
Sbjct 417124 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 417065
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| |
Sbjct 417064 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 417005
Query 400417 GATGCTAGTCCTAAA 400431
|| ||| || ||||
Sbjct 417004 GAAGCTTCTCATAAA 416990
>seq115
Length=644410
Score = 100 bits (110), Expect = 2e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || ||
Sbjct 185545 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 185486
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||||||| |||| |||||||| || || || | || || || ||||| ||
Sbjct 185485 TTGAGTCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAG 185426
Query 282452 GCAGGAACAGTAATAACGGC 282471
||||| || || | ||| ||
Sbjct 185425 GCAGGTACTGTGACAACAGC 185406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739794495351876
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