Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8872 178 1e-38 seq8009 165 6e-35 seq4670 104 2e-16 seq115 100 2e-15 >seq8872 Length=1380361 Score = 178 bits (196), Expect = 1e-38 Identities = 905/1421 (64%), Gaps = 60/1421 (4%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||| ||||| ||||||||||| | |||||| |||||||| || Sbjct 973493 TTATCCACAGCAGAGACATTGAGAATGCCATTGGCATCAATATCAAAAGTGACTTCCATC 973434 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTA-TT 281535 ||||| || || | | ||||| || || ||| | | |||| || ||| | || Sbjct 973433 TGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAT-TTGGCAGGCAAGTT 973375 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 281594 |||| || || | |||| ||||| | ||| || || |||| | ||| || | Sbjct 973374 GCTATCCTTGGTCATGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACCAGGCTGGT 973316 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCA 281653 | || || || || || || | |||| | | || |||||| |||| || | Sbjct 973315 TGTCAGAGTAGGTGGTGAA-AGTCTGCGTCTGCTTTGTAGGAATGGTTGCATTGTGCTTG 973257 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 | | | ||||| | |||||||| ||||| | ||||| ||||||||||||||||| Sbjct 973256 AGGACA---GTCATGACTCCACCAGCGGTTTCAATTCCAAGGGAAAGAGGAGTGACATCC 973200 Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 | || | | | ||||| |||||| | | ||| || ||| ||| | || | | Sbjct 973199 AACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGAAAAAATGGCTACCTGGACA 973140 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || ||||||||||||| ||| ||| | || || | | | ||||| || ||| |||||| Sbjct 973139 GCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTCTTTCCCATTG 973080 Query 281834 AAAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || || | ||||||| ||| | ||| || || | | ||| || || || | || Sbjct 973079 AAGAAGTCCTGGAGAAGTT-TCTCAGTCTTGGGGATGTGGGTTGAGCCACCCACCGAGAC 973021 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC--GGGT 281950 ||| ||||| | ||| || || |||| || | ||| | | |||| || | |||| Sbjct 973020 AATATCATGGATCTGAGACTTGTCCATCTTGGCATCTGA-AGGGCTTTCTCCATAAGGGT 972962 Query 281951 TCAAGA--CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAG 282008 || | ||| | |||||||| | | | |||||| |||| | ||| Sbjct 972961 CCAGGGTGCCA---CAGAACAAGTCAGCATTCAATTCTTCAAATT--------GGAAGT- 972914 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 ||| ||||||| | || ||||||| ||||| | | ||| || | Sbjct 972913 TGA------------TTCCTTCATAGAAGGAATCAATCTCAATACTGGCTTGGGTGCTGG 972866 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTT 282124 |||| || | || |||||| | ||| | | || || | | | || || | Sbjct 972865 AAGAGAGAGTGCGCTTAGCAAGCTCAGAAACAGTATGGAGGCAACAGACAGCCCTCTTGT 972806 Query 282125 GCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--A 282182 || |||| ||| | || | ||| |||||||| ||||||| | ||| | | Sbjct 972805 TCTCCCTGAT----ATCCTTCTTGTGTTTGCTCTTGAACTCTTCAATGAA--ATGGTTGA 972752 Query 282183 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 282242 | | ||| | | ||||| || ||| |||| ||| | ||| | | || | Sbjct 972751 CCTTGCCATTGGCGACGTCTTCTCCAGACAA----GTATCTCCAGCTATAGATTTGACCT 972696 Query 282243 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302 || | |||||| ||| || | | | |||||| | |||||||||| ||||| Sbjct 972695 CAAAGATTCCATCCTCAGTAGTGAGGACTGACACATCAAAA-TGCCACCACCCAAATCAA 972637 Query 282303 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 | || || ||||| | ||| | ||||| || | ||||| ||| |||||||| Sbjct 972636 AGATCAGCACATTTCTCTCTGCTCCAACCTTTTTGTCTAAGCCATAGGCAGGAGCAGCAG 972577 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 |||||| |||| | || ||||| | ||| | ||| ||||||| |||| |||||||| | Sbjct 972576 CAGTTGTTTCACTGATGATTCTAAGTACACTGAGA-CAGCAATAGTTCCAGCATCTTTGG 972518 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 |||| || | || || || ||||| || ||||| || || | ||| || | || || Sbjct 972517 TGGCCTGACGCTGAGAGTCATTAAAGTAGGCAGGTACTGTGACAACAGCGTTGGTAACAG 972458 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 || |||| | || || ||| ||| | || | | | ||| ||||| | | Sbjct 972457 TCTTCCCAAGGCAGGCTTCTGTGATTTCCTTCCTCTTTGTCAGGACCATGGATGACACCT 972398 Query 282543 GTTCTGGA-GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 282601 ||| || || | | ||| | | ||| ||| ||||| || | ||| | | Sbjct 972397 CCTCTTGATCAAAACTCTTTGTCTCCCCCTTG-TATTCTACTTAAACCTTAGGTCTGCCA 972339 Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661 || |||| || | || ||||||| ||||||||| || || ||| |||||| Sbjct 972338 GCATCATTTGCCACCATGAAGGGCCAATGTTTCATATCAGACTGGACAACAGCATCATTA 972279 Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 || || ||| | | | |||| |||||||||| || ||||| ||||| | || || Sbjct 972278 AATCTTCATCCACTAAGTTGTTTGGCATCAAAAACTGTGTTGGTGGGATTCATTGTGACT 972219 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 || | || || ||||| | |||| ||| || | ||||| | ||||| ||| Sbjct 972218 TGGTTCTTTGCAGCATCACTGATCAATCGTTTGGTATTAGTAAAGGTGACATAGCTTGGG 972159 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 282822 || || | || || |||||||| ||||| ||||| || || Sbjct 972158 GTGGTTCAGTTCCCCTGATCATTGGCAATTATTTCCACCTT 972118 >seq8009 Length=358766 Score = 165 bits (182), Expect = 6e-35 Identities = 896/1412 (63%), Gaps = 24/1412 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 || || ||||| ||||||||||||||||| | ||||| || || ||||| || || || Sbjct 177773 GCTGTTACATTGAGAATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACT 177832 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || | || || ||||| || || || ||| ||||| || || || | Sbjct 177833 CCCCTGGGTGCCGGAGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGA 177892 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | || ||||| | | ||||| || | | ||||| ||||| || Sbjct 177893 GTCATGGCCCTCTCGCCCTCATACACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAG 177952 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || || || | |||| | | ||| || || || | ||| | | || | || Sbjct 177953 GTGGTGAAAA-TCTGTGTCTGCTTAGTGGGGATGGTGGAGTTGCGCTTGATTAGTACAGT 178011 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | || || || || || ||||| | ||| || |||| || || | | | | Sbjct 178012 CATGACTCCCCCTGCGGTCTCCAAACCTAAAGACAGGGGAGCCACGTCCAACAAAAGCAG 178071 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 | || | |||||| | | || | | ||| ||||| |||| ||||| ||||| Sbjct 178072 GTCCTGTACCTTTTCAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATA 178131 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 281843 ||||| || ||||| || || | | | || || | |||||| || | | ||| Sbjct 178132 GGCAACTGCCTCATCGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCTTG 178191 Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 || | | | |||||||| || |||| || || || ||||| ||||| ||||| | Sbjct 178192 CAACAGCCTCTGA-ACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGA 178250 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 | | |||||||| || | |||| | | | || || || || || || | | Sbjct 178251 TTTTAGCTTTATCCATCTTGGCATCCCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCC 178310 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 |||||| ||||| ||| | ||||| || ||||| || || || | || || || Sbjct 178311 TAAACAGGTCTGCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTC 178368 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||| ||||| | | || |||| ||| | | | || || ||| || || | | Sbjct 178369 AATGCCTTCATAAAGTGAGTCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCT 178428 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCA 282137 || || | || || || || | | | | | || |||| | ||| |||| Sbjct 178429 CTTGGCCCTCTCGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG-- 178486 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | |||| ||| |||||||| ||||| ||| | | ||||| | || |||| Sbjct 178487 --TCCTTCTTATGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAA 178544 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 |||| || || ||||| | || | || | || || | || | |||| ||||| | Sbjct 178545 AATCCTCTCCACCCAAGTGGGTGTCCCCGGCTGTGGCCTTAACCTCAAAAATCCCATCAT 178604 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC 282316 | | | || | | |||||| || || ||||||| |||||| || | |||| || Sbjct 178605 CTATGGTCAGGACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTC 178664 Query 282317 ATT-TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 | || || | || ||| | | ||| ||||| |||| ||||||||||| |||||||| Sbjct 178665 GCTCTCCCTGACCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATT 178722 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 |||||||| | ||||| ||||| || || |||||||| || ||||| || | || Sbjct 178723 GATAATTCTTAGCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTG 178782 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || || || || || || || ||||| || || |||| || || | || | | | Sbjct 178783 AGAGTCATTGAAGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAA 178842 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 ||| || || | ||||| ||| | | | ||| || || |||| || ||| || | Sbjct 178843 AGCCTCAGCAGTCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-A 178901 Query 282556 TTGCTTGGATT--CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 |||| || | |||| || || || | | || || || | || || Sbjct 178902 AAGCTTTCTTTTCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATT 178960 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 |||| || |||||| ||||||||||||||| || | |||||||| | ||| || Sbjct 178961 ACTTGGAAAGGCCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCG 179020 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | ||||| |||||||| | ||| || ||||| | || | || | ||||| Sbjct 179021 ATCAGACGTTTGGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCC 179080 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||| || || || | || || ||||| || | || || || || ||||| || Sbjct 179081 GCATCGCCGATGAGCCGCTCGGTGTCTGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTG 179140 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACC 282825 || || || || || || || || || || || Sbjct 179141 CCCTGGTCGTTGGCGATGATCTCTACCTTGCC 179172 >seq4670 Length=477803 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 417124 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 417065 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| | Sbjct 417064 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 417005 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 417004 GAAGCTTCTCATAAA 416990 >seq115 Length=644410 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || || Sbjct 185545 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 185486 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||| |||||||| || || || | || || || ||||| || Sbjct 185485 TTGAGTCCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTAAAGTAG 185426 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||| || Sbjct 185425 GCAGGTACTGTGACAACAGC 185406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739794495351876