Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq6424 113 4e-20
>seq6424
Length=433988
Score = 113 bits (124), Expect = 4e-20
Identities = 216/316 (68%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||| | ||| || || ||||| ||| || ||| |||| | |||||| | || |
Sbjct 290371 ATGCCTTCTATGTTGCGGACCTGGGAGACATTCTGAAGAAACATCTGAGATGGTTGAAAG 290312
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323
|| | ||| |||| || ||||| || || || | | || | || || | |
Sbjct 290311 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACGA-TAGTG 290253
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
||||| || |||||| || || || |||||||||||||| ||| || || || ||
Sbjct 290252 AAGACACTCGCTGCCATTGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAATTG 290193
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
|||| | ||| || || | | |||| ||||| | | ||| ||||| ||||| ||
Sbjct 290192 GTGCAGAGTCTCGGGGTGCCCCCAGAGAGGATTATCTATGCAAATCCGTGTAAACAAGTG 290133
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
|| || || | ||| || || | | ||||| | |||||||||||||||||||||
Sbjct 290132 TCTCAGATTAAGTACGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 290073
Query 20504 GAGCTTACCAAAATTG 20519
||||| | ||| |||
Sbjct 290072 GAGCTGATGAAAGTTG 290057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463446945907680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |