Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq13061 277 2e-69 seq8866 199 5e-46 >seq13061 Length=872146 Score = 277 bits (306), Expect = 2e-69 Identities = 669/1005 (67%), Gaps = 17/1005 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 477603 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 477662 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| | | || | ||| || | || || | Sbjct 477663 GGTCGAATTTGTTGGCAAACAAGTGGTGCACGCGC---AACAGCCAGTTCAAGTCACCGG 477719 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||| ||||||||| || |||| || | Sbjct 477720 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 477779 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || ||||||||||| | Sbjct 477780 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAG 477839 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||||||||||| | || | || || | || || || | || | ||||| | | Sbjct 477840 ACGTGTCGTACTTAT-GGCTCAAGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGAATA 477898 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | ||||| || || || || || || | ||||||||| |||| | Sbjct 477899 GTGGCCCAGAGATACTCGTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGG 477958 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| | | || | ||| || || ||| | || | ||| || || || Sbjct 477959 ATATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTT 478018 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||| | ||| | | ||| || | |||||| ||||||||| | | Sbjct 478019 CCTGAAAAGAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTTCCCGTGTTGGTCAGC 478078 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | ||||| | | ||| ||||||| | | ||| ||| || || | Sbjct 478079 TTTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATT 478135 Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| |||| |||| ||| ||| |||| | || || || || Sbjct 478136 CTCTCCGTTTCTAGGTTGTTCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGG 478195 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 478196 TTGGTTTTAATAGGAAAATCCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTC 478255 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | | | || ||||| | ||||| || || ||||| || || ||||| || || ||| Sbjct 478256 ATCCTGGAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATAC 478315 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || |||||||||| | | |||||||||||||||| ||| || || | || || | Sbjct 478316 ACCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCC---C 478372 Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || || | || | || ||| | ||| | || ||||| | || || | |||| Sbjct 478373 ACAGCTGCAGCCAAAAACGATTCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTC 478432 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| ||||||||||||||| | || || | ||| || || || || || ||||| Sbjct 478433 TGAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 478492 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 |||||||| ||||| || ||||| ||||| || ||| || | || ||| || ||| Sbjct 478493 ATAGAATATGCTATTGGAAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTG 478552 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || | ||||| || | |||||||| | |||| Sbjct 478553 CGCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 478597 >seq8866 Length=226872 Score = 199 bits (220), Expect = 5e-46 Identities = 218/290 (75%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 171803 TTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCCACGGTGGTG 171862 || || || ||||| || ||||| | || | |||| | || ||||||| ||||| | Sbjct 77561 TTCCCAGAGCCAAAGGTGTTAAAGAGGCATTTGTAACACGCCTCATCCTCCAAGGTGGCG 77620 Query 171863 TTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACCCGGTCCTTG 171922 |||||||| || | | || || ||||||| || ||||| ||||| ||| ||||||| Sbjct 77621 TTCCAAAAGGTGATGGCTGAGTTCGTGAGTCCCAGCTGCGTGATGTTGACCTTGTCCTTG 77680 Query 171923 TACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTC 171982 || | ||||||||| ||||| || || ||||||||| | ||| ||||||||| ||||| Sbjct 77681 TAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGTAGGTGATCATGTTTTCTGGGCTT 77740 Query 171983 GTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGAAGAGAGCAT 172042 |||||| | || ||||| || || || |||||||||| | ||| ||||||||| Sbjct 77741 ACAGCCTTGACTTTTTGCCATGTCACAATCAAAACTTCTTGGGGATGTTGCAGAGAGCAT 77800 Query 172043 CTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCAC 172092 |||||||||||||||||||||| | | | || |||| || || ||||| Sbjct 77801 CTTAAAGAAGCAGGTGTGTTCAGCAGTGCTTTTACGTCCTGGGTCACCAC 77850 Score = 107 bits (118), Expect = 2e-18 Identities = 173/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || ||||| |||| ||||| || | ||| ||||| |||| Sbjct 74943 ACAGTTTCCCTGTAGTCAGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACATCCT-- 75000 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| || |||||||| || || Sbjct 75001 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 75059 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || | || || || | || ||||| | Sbjct 75060 TTGGGGTGTGAGACGATCTCGGTACTGTTCTCAACCCCCGACCCAGAGACCTTCCAGGAG 75119 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 75120 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 75179 Query 171743 TCATAGTG 171750 | |||||| Sbjct 75180 TTATAGTG 75187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578308895209600