Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq13061 277 2e-69
seq8866 199 5e-46
>seq13061
Length=872146
Score = 277 bits (306), Expect = 2e-69
Identities = 669/1005 (67%), Gaps = 17/1005 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 477603 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 477662
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||| ||||| || |||| ||| ||| | | || | ||| || | || || |
Sbjct 477663 GGTCGAATTTGTTGGCAAACAAGTGGTGCACGCGC---AACAGCCAGTTCAAGTCACCGG 477719
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| ||||||||||| |||||||| ||||||| ||||||||| || |||| || |
Sbjct 477720 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 477779
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| ||||| ||||| ||||| | || ||||||||||| |
Sbjct 477780 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAG 477839
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| ||||||||||| | || | || || | || || || | || | ||||| | |
Sbjct 477840 ACGTGTCGTACTTAT-GGCTCAAGGACAGTGAGCCTGGGACTTCGGGGATCCTCTGAATA 477898
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | ||||| || || || || || || | ||||||||| |||| |
Sbjct 477899 GTGGCCCAGAGATACTCGTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGG 477958
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| | | || | ||| || || ||| | || | ||| || || ||
Sbjct 477959 ATATTTTGGTTCTGGAGCACGTACTCCACATATTCCCTACTGACCACAAAATAGGCACTT 478018
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||| | ||| | | ||| || | |||||| ||||||||| | |
Sbjct 478019 CCTGAAAAGAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTTCCCGTGTTGGTCAGC 478078
Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597
|||| | ||||| | | ||| ||||||| | | ||| ||| || || |
Sbjct 478079 TTTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATT 478135
Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654
|| || ||||| |||| |||| ||| ||| |||| | || || || ||
Sbjct 478136 CTCTCCGTTTCTAGGTTGTTCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGG 478195
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
||||| |||| ||||| || | ||||||||||| || | || ||||| | | |
Sbjct 478196 TTGGTTTTAATAGGAAAATCCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTC 478255
Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774
| | | | || ||||| | ||||| || || ||||| || || ||||| || || |||
Sbjct 478256 ATCCTGGAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGATGCATAC 478315
Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834
|| |||||||||| | | |||||||||||||||| ||| || || | || || |
Sbjct 478316 ACCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCC---C 478372
Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
|| || | || | || ||| | ||| | || ||||| | || || | ||||
Sbjct 478373 ACAGCTGCAGCCAAAAACGATTCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTC 478432
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
||||| ||||||||||||||| | || || | ||| || || || || || |||||
Sbjct 478433 TGAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 478492
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011
|||||||| ||||| || ||||| ||||| || ||| || | || ||| || |||
Sbjct 478493 ATAGAATATGCTATTGGAAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTG 478552
Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
|| | | | | || | ||||| || | |||||||| | ||||
Sbjct 478553 CGCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 478597
>seq8866
Length=226872
Score = 199 bits (220), Expect = 5e-46
Identities = 218/290 (75%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 171803 TTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCCACGGTGGTG 171862
|| || || ||||| || ||||| | || | |||| | || ||||||| ||||| |
Sbjct 77561 TTCCCAGAGCCAAAGGTGTTAAAGAGGCATTTGTAACACGCCTCATCCTCCAAGGTGGCG 77620
Query 171863 TTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACCCGGTCCTTG 171922
|||||||| || | | || || ||||||| || ||||| ||||| ||| |||||||
Sbjct 77621 TTCCAAAAGGTGATGGCTGAGTTCGTGAGTCCCAGCTGCGTGATGTTGACCTTGTCCTTG 77680
Query 171923 TACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTC 171982
|| | ||||||||| ||||| || || ||||||||| | ||| ||||||||| |||||
Sbjct 77681 TAGGCAGGCTGGACTACAACCCCATGGTTCTCGCTGTAGGTGATCATGTTTTCTGGGCTT 77740
Query 171983 GTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGAAGAGAGCAT 172042
|||||| | || ||||| || || || |||||||||| | ||| |||||||||
Sbjct 77741 ACAGCCTTGACTTTTTGCCATGTCACAATCAAAACTTCTTGGGGATGTTGCAGAGAGCAT 77800
Query 172043 CTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCAC 172092
|||||||||||||||||||||| | | | || |||| || || |||||
Sbjct 77801 CTTAAAGAAGCAGGTGTGTTCAGCAGTGCTTTTACGTCCTGGGTCACCAC 77850
Score = 107 bits (118), Expect = 2e-18
Identities = 173/248 (70%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
||||||| ||| ||| || ||||| |||| ||||| || | ||| ||||| ||||
Sbjct 74943 ACAGTTTCCCTGTAGTCAGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACATCCT-- 75000
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| || || || || ||||| | || || ||||| || |||||||| || ||
Sbjct 75001 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 75059
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| | ||| ||| | | ||||| || || | || || || | || ||||| |
Sbjct 75060 TTGGGGTGTGAGACGATCTCGGTACTGTTCTCAACCCCCGACCCAGAGACCTTCCAGGAG 75119
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| | ||| ||||| | |||| | ||||||||||| || |||| |||||| | ||
Sbjct 75120 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 75179
Query 171743 TCATAGTG 171750
| ||||||
Sbjct 75180 TTATAGTG 75187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578308895209600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |