Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq15871 102 8e-17
seq5291 91.5 1e-13
seq11172 84.2 2e-11
>seq15871
Length=707613
Score = 102 bits (112), Expect = 8e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|||||||| ||||| || | | |||||||| || ||||||||||| || ||||||
Sbjct 26698 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACG 26757
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| |||||| |||||||| || | | |||| | | ||| || ||||| || ||||| ||
Sbjct 26758 CCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 26817
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || || || || | | || | || || | |||||||| || | ||
Sbjct 26818 TTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 26877
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || ||||||||||| || || | ||| ||||||||
Sbjct 26878 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | |
Sbjct 27179 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCA 27238
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| || ||||| || ||||||||||| || || || || |
Sbjct 27239 AAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACA 27298
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | |||||||| || | || | ||||||||||| || || |||
Sbjct 27299 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTT 27358
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 27359 ACAAAGATCTGCAT 27372
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | |
Sbjct 26951 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCA 27010
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| || ||||| || ||||| ||||| || || || || |
Sbjct 27011 AAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACA 27070
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | |||||||| || | || | || ||||| ||||| || ||
Sbjct 27071 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTC 27130
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 27131 ACGAAGATCTGCAT 27144
>seq5291
Length=463539
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| ||| ||||| | ||||| |||||||||||| ||| |||||| || ||||| |||
Sbjct 29702 TACTCCACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 29761
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|| |||||||| || | |||||| | |||||||| ||
Sbjct 29762 CTCTTCCGATTACAGGAATCTTTGTACAGCATGTATGG 29799
>seq11172
Length=1040880
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || |||| |||||| || || || || |||
Sbjct 4356 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGAA 4415
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | || || || ||||| || ||||| ||||| || || || |
Sbjct 4416 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 4475
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | || || | ||||| || |||| || | || || |||||||| || ||
Sbjct 4476 TTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGTCTTCCCAGTCAGGGTCTTC 4535
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 4536 ACGAAAATCTGCAT 4549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476509765221360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |