Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15871 102 8e-17 seq5291 91.5 1e-13 seq11172 84.2 2e-11 >seq15871 Length=707613 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || |||||| Sbjct 26698 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACG 26757 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | | ||| || ||||| || ||||| || Sbjct 26758 CCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 26817 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || || | | || | || || | |||||||| || | || Sbjct 26818 TTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 26877 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||||||||| || || | ||| |||||||| Sbjct 26878 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 26916 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 27179 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCA 27238 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || ||||| || ||||||||||| || || || || | Sbjct 27239 AAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACA 27298 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | ||||||||||| || || ||| Sbjct 27299 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTT 27358 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 27359 ACAAAGATCTGCAT 27372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 26951 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCA 27010 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || ||||| || ||||| ||||| || || || || | Sbjct 27011 AAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACA 27070 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || ||||| ||||| || || Sbjct 27071 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTC 27130 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 27131 ACGAAGATCTGCAT 27144 >seq5291 Length=463539 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||| |||||||||||| ||| |||||| || ||||| ||| Sbjct 29702 TACTCCACTATTTCTGTGCACAAGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 29761 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || |||||||| || | |||||| | |||||||| || Sbjct 29762 CTCTTCCGATTACAGGAATCTTTGTACAGCATGTATGG 29799 >seq11172 Length=1040880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || |||| |||||| || || || || ||| Sbjct 4356 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGAA 4415 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || || || ||||| || ||||| ||||| || || || | Sbjct 4416 AAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 4475 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || |||| || | || || |||||||| || || Sbjct 4476 TTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGTGATGGTCTTCCCAGTCAGGGTCTTC 4535 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 4536 ACGAAAATCTGCAT 4549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476509765221360