Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq7822 116 1e-22 seq8532 107 6e-20 seq8373 107 6e-20 seq3370 107 6e-20 seq325 107 6e-20 seq12717 104 7e-19 seq16249 98.7 3e-17 seq15871 98.7 3e-17 seq10919 98.7 3e-17 seq1792 98.7 3e-17 seq9180 96.9 1e-16 seq13805 93.3 1e-15 seq9824 91.5 5e-15 seq8577 89.7 2e-14 seq3202 89.7 2e-14 seq13127 82.4 2e-12 seq10079 82.4 2e-12 seq8268 82.4 2e-12 seq8221 82.4 2e-12 seq9073 78.8 3e-11 >seq7822 Length=407409 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 333517 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 333576 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 333577 CCGGGTTTCAGC 333588 >seq8532 Length=276393 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 185500 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 185559 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 185560 TCCCGGGTTTCGGC 185573 >seq8373 Length=1515988 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 854957 TGGCAGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 854898 Query 2827 CCCCGGGCTTCAGC 2840 ||| || ||| || Sbjct 854897 TCCCAGGTTTCGGC 854884 >seq3370 Length=519644 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 103706 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 103765 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 103766 CCGGGTTTCGGC 103777 >seq325 Length=642790 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 478435 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 478494 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 478495 TCCCGGGTTTCGGC 478508 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 469158 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 469099 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 469098 CCGGGTTTCGGC 469087 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 514523 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 514464 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 514463 TCCCGGGTTTCGGC 514450 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 493195 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 493136 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 493135 CCGGGTTTCGGC 493124 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 594214 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 594155 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 594154 CCGGGTTTCGGC 594143 Score = 93.3 bits (102), Expect = 1e-15 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 486978 TGGCTGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCA 487037 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 487038 ACCCCAGGTTT 487048 >seq12717 Length=889932 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 643655 GCCGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 643714 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 643715 CCGGGTTTCGGC 643726 >seq16249 Length=2332750 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1743103 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1743044 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1743043 CCGGGTTTCGGC 1743032 >seq15871 Length=707613 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 39079 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 39020 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 39019 CCGGGTTTCGGC 39008 >seq10919 Length=52843 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct 49016 GCCGAAATAGCTCAGTTGAGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAGC 48957 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 48956 CCGGGTTTCGGC 48945 >seq1792 Length=578420 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 66821 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 66762 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 66761 CCGGGTTTCGGC 66750 >seq9180 Length=194084 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 95413 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 95472 Query 2829 CCGGGCTT 2836 || || || Sbjct 95473 CCAGGTTT 95480 >seq13805 Length=2833619 Score = 93.3 bits (102), Expect = 1e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2780 TCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAG 2839 ||| ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| Sbjct 502497 TCAATTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCAGGTTTCAG 502438 Query 2840 C 2840 | Sbjct 502437 C 502437 >seq9824 Length=127170 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 52352 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 52409 >seq8577 Length=269867 Score = 89.7 bits (98), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||| | Sbjct 169712 TGGCCGAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTTGA 169653 Query 2827 CCCCGGGCTTCAGC 2840 ||||| ||| || Sbjct 169652 TTCCGGGTTTCGGC 169639 >seq3202 Length=988652 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||| |||||||| |||||||||||||||||||||||||||| | | Sbjct 217312 GCCGAAATAGCTCAGTTGAGAGAGCATCAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 217253 Query 2829 CCGGGCTTC 2837 | ||| ||| Sbjct 217252 CTGGGTTTC 217244 >seq13127 Length=1218329 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||| Sbjct 1064006 GCTGAAATAGCTCACTTGGGAGAGCATTAG-CTAAAGATCTAAAGGTCCCTGGTTCA 1063951 >seq10079 Length=108664 Score = 82.4 bits (90), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| | |||||||||||||| || ||||||||||||||||||||||| ||||| | Sbjct 32209 GCTGAAATGACTCAGTTGGGAGAGTGTTGGACTGAAGATCTAAAGGTCCCTGATTCAATC 32268 Query 2829 CCGGG 2833 ||||| Sbjct 32269 CCGGG 32273 >seq8268 Length=315276 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2779 CTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTT 2836 |||||||||||||||||||| ||||||| |||||||||||||||||| |||||| || Sbjct 211641 CTCAGTTGGGAGAGCATTAGTCTGAAGACCTAAAGGTCCCTGGTTCAGTCCCGGGTTT 211584 >seq8221 Length=321804 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 || ||| || |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3689 GCCGAAATAACTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 3632 >seq9073 Length=205879 Score = 78.8 bits (86), Expect = 3e-11 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 ||||||| |||||||||| |||||||||||||||||||| |||||||| | || ||| | Sbjct 95388 TAGCTCA-TTGGGAGAGCGTTAGACTGAAGATCTAAAGGACCCTGGTTTGATCCTGGGTT 95330 Query 2836 TCAGC 2840 ||||| Sbjct 95329 TCAGC 95325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846648457770