Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq7822 116 1e-22
seq8532 107 6e-20
seq8373 107 6e-20
seq3370 107 6e-20
seq325 107 6e-20
seq12717 104 7e-19
seq16249 98.7 3e-17
seq15871 98.7 3e-17
seq10919 98.7 3e-17
seq1792 98.7 3e-17
seq9180 96.9 1e-16
seq13805 93.3 1e-15
seq9824 91.5 5e-15
seq8577 89.7 2e-14
seq3202 89.7 2e-14
seq13127 82.4 2e-12
seq10079 82.4 2e-12
seq8268 82.4 2e-12
seq8221 82.4 2e-12
seq9073 78.8 3e-11
>seq7822
Length=407409
Score = 116 bits (128), Expect = 1e-22
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 333517 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 333576
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 333577 CCGGGTTTCAGC 333588
>seq8532
Length=276393
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 185500 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 185559
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 185560 TCCCGGGTTTCGGC 185573
>seq8373
Length=1515988
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854957 TGGCAGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 854898
Query 2827 CCCCGGGCTTCAGC 2840
||| || ||| ||
Sbjct 854897 TCCCAGGTTTCGGC 854884
>seq3370
Length=519644
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 103706 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 103765
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 103766 CCGGGTTTCGGC 103777
>seq325
Length=642790
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478435 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 478494
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 478495 TCCCGGGTTTCGGC 478508
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 469158 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 469099
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 469098 CCGGGTTTCGGC 469087
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 514523 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 514464
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 514463 TCCCGGGTTTCGGC 514450
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 493195 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 493136
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 493135 CCGGGTTTCGGC 493124
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 594214 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 594155
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 594154 CCGGGTTTCGGC 594143
Score = 93.3 bits (102), Expect = 1e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825
|||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 486978 TGGCTGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCA 487037
Query 2826 ACCCCGGGCTT 2836
||||| || ||
Sbjct 487038 ACCCCAGGTTT 487048
>seq12717
Length=889932
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 643655 GCCGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 643714
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 643715 CCGGGTTTCGGC 643726
>seq16249
Length=2332750
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1743103 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1743044
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1743043 CCGGGTTTCGGC 1743032
>seq15871
Length=707613
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 39079 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 39020
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 39019 CCGGGTTTCGGC 39008
>seq10919
Length=52843
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 49016 GCCGAAATAGCTCAGTTGAGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAGC 48957
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 48956 CCGGGTTTCGGC 48945
>seq1792
Length=578420
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 66821 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 66762
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 66761 CCGGGTTTCGGC 66750
>seq9180
Length=194084
Score = 96.9 bits (106), Expect = 1e-16
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 95413 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 95472
Query 2829 CCGGGCTT 2836
|| || ||
Sbjct 95473 CCAGGTTT 95480
>seq13805
Length=2833619
Score = 93.3 bits (102), Expect = 1e-15
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 2780 TCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAG 2839
||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 502497 TCAATTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCAGGTTTCAG 502438
Query 2840 C 2840
|
Sbjct 502437 C 502437
>seq9824
Length=127170
Score = 91.5 bits (100), Expect = 5e-15
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 52352 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 52409
>seq8577
Length=269867
Score = 89.7 bits (98), Expect = 2e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 169712 TGGCCGAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTTGA 169653
Query 2827 CCCCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 169652 TTCCGGGTTTCGGC 169639
>seq3202
Length=988652
Score = 89.7 bits (98), Expect = 2e-14
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||| |||||||| |||||||||||||||||||||||||||| | |
Sbjct 217312 GCCGAAATAGCTCAGTTGAGAGAGCATCAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 217253
Query 2829 CCGGGCTTC 2837
| ||| |||
Sbjct 217252 CTGGGTTTC 217244
>seq13127
Length=1218329
Score = 82.4 bits (90), Expect = 2e-12
Identities = 53/57 (93%), Gaps = 1/57 (2%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 1064006 GCTGAAATAGCTCACTTGGGAGAGCATTAG-CTAAAGATCTAAAGGTCCCTGGTTCA 1063951
>seq10079
Length=108664
Score = 82.4 bits (90), Expect = 2e-12
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| | |||||||||||||| || ||||||||||||||||||||||| ||||| |
Sbjct 32209 GCTGAAATGACTCAGTTGGGAGAGTGTTGGACTGAAGATCTAAAGGTCCCTGATTCAATC 32268
Query 2829 CCGGG 2833
|||||
Sbjct 32269 CCGGG 32273
>seq8268
Length=315276
Score = 82.4 bits (90), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 2779 CTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTT 2836
|||||||||||||||||||| ||||||| |||||||||||||||||| |||||| ||
Sbjct 211641 CTCAGTTGGGAGAGCATTAGTCTGAAGACCTAAAGGTCCCTGGTTCAGTCCCGGGTTT 211584
>seq8221
Length=321804
Score = 82.4 bits (90), Expect = 2e-12
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3689 GCCGAAATAACTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 3632
>seq9073
Length=205879
Score = 78.8 bits (86), Expect = 3e-11
Identities = 57/65 (88%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835
||||||| |||||||||| |||||||||||||||||||| |||||||| | || ||| |
Sbjct 95388 TAGCTCA-TTGGGAGAGCGTTAGACTGAAGATCTAAAGGACCCTGGTTTGATCCTGGGTT 95330
Query 2836 TCAGC 2840
|||||
Sbjct 95329 TCAGC 95325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15846648457770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |