Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq8498 89.7 5e-13 >seq8498 Length=279317 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||| || || | || || || | ||||| |||| |||||| | Sbjct 98708 CAAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACC 98767 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 98768 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 98827 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 ||||||||||| || | | ||||| ||||| ||||||| | | |||| || Sbjct 98828 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACCTTGTC--TGAC 98885 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||||| |||||||| || ||||| ||||| ||||||| ||| Sbjct 98886 TACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 98927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444999672784320