Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq8866 251 8e-62 seq15027 156 5e-33 seq10360 140 4e-28 seq8308 136 5e-27 >seq8866 Length=226872 Score = 251 bits (278), Expect = 8e-62 Identities = 247/319 (77%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||| | | | ||||||||||| || || || | | |||||| ||| Sbjct 77850 GTGGTGACCCAGGACGTAAAAGCACTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 77791 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | || || || ||||||| || ||||| ||| ||||| | | ||||| Sbjct 77790 CAACATCCCCAAGAAGTTTTGATTGTGACATGGCAAAAAGTCAAGGCTGTAAGCCCAGAA 77731 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 77730 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 77671 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | |||||||| ||||| |||||| |||||| ||||||| |||||||| ||||||| Sbjct 77670 GTCAACATCACGCAGCTGGGACTCACGAACTCAGCCATCACCTTTTGGAACGCCACCTTG 77611 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||| ||| ||||| |||||||||||||||||||| |||||||| | ||| || Sbjct 77610 GAGGATGAGGCGTGTTACAAATGCCTCTTTAACACCTTTGGCTCTGGGAAGAGCTCAGGA 77551 Query 171372 GTGGCCTGCCTCACCCTCT 171390 || ||||||||||| |||| Sbjct 77550 GTAGCCTGCCTCACTCTCT 77532 Score = 197 bits (218), Expect = 2e-45 Identities = 210/277 (76%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||||| | ||| || ||||| || ||||| || Sbjct 75208 GTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAATATCACTTGC 75149 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | || ||||| | |||| Sbjct 75148 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTCTGGGTCGGGGGTTGAG 75089 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 75088 AACAGTACCGAGATCGTCTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 75029 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 75028 ATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGT 74969 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 74968 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 74932 >seq15027 Length=2440082 Score = 156 bits (172), Expect = 5e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 2417413 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 2417354 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||| |||||| || |||||||| | Sbjct 2417353 GGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATT 2417294 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| ||||| || ||| ||||||||| || || |||||| || || || | Sbjct 2417293 CACCACGTAGAACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTGA 2417234 Query 147162 GGGG 147165 |||| Sbjct 2417233 GGGG 2417230 Score = 129 bits (142), Expect = 7e-25 Identities = 121/153 (79%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 147015 GAGCAGCGAG--TAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTC 147072 || ||||| | |||||||| ||||||||||| || |||||||||||||| ||||||| Sbjct 2417118 GACCAGCGTGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGT 2417059 Query 147073 TGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCAC 147132 ||||||| |||||| || |||||||| | ||||||| |||||||| ||| |||||| Sbjct 2417058 TGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCAT 2416999 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 || || || |||||| || || || | |||| Sbjct 2416998 GGGGGGAGGGCCATGAGAGGGAGATCTGAGGGG 2416966 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 2414747 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTTG 2414688 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | || || || ||||||||| ||| ||||| || ||||||| Sbjct 2414687 GAGAAGCCCAGGCTGTCAAGGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCC 2414628 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 2414627 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 2414595 >seq10360 Length=5556724 Score = 140 bits (154), Expect = 4e-28 Identities = 538/835 (64%), Gaps = 44/835 (5%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| | | ||||||| ||||| | | |||||| Sbjct 3361076 GTATTCCCTGGTGTTCATGATTGGCTTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 3361017 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 3361016 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 3360957 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 3360956 TGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 3360903 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||| |||||||||||| | || || | || ||| | |||| Sbjct 3360902 GTGGGCTTTTGGCCACTCCATGTGTAAGTTGCTCTCTGGACTCTATTACATGGGATTGTA 3360843 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| ||||||| || | || |||| Sbjct 3360842 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 3360783 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 || | | | | ||| || | | |||||| || | ||| || | |||| Sbjct 3360782 TGTATTTGCCCTTCGAGCCCGTACAGTCACTTTTGGCATCGTCACTAGCATCTTCACCTG 3360723 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| ||| | | | || | || || ||| ||||| |||| ||| | | | | Sbjct 3360722 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAGAGGAGGC 3360663 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACACAGACTTT------------TGGAAGGGGG 9076 || || |||| || |||| ||| |||| | |||||| | Sbjct 3360662 TGGACAGACTATCTG-CAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGAAGCGTT 3360604 Query 9077 TTGATGTTACCAGCATGA----CCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCC 9132 | ||| | || |||| || |||| | || |||||| |||| | |||||| Sbjct 3360603 TCCATGCTCTGAGAATGAATATCCTGGGTCTCGCT----CTGCCTCTGCTCGTTATGGCC 3360548 Query 9133 TTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCT 9191 ||||||| | ||| || || || || | | |||| || || | ||| | Sbjct 3360547 ATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAAAT 3360493 Query 9192 GC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCT 9250 | | ||| | ||||||||| |||| ||||| | | ||| | ||||||| |||| Sbjct 3360492 ACAAAGCCATTCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTTTGGACACCCT 3360433 Query 9251 ACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAG 9310 |||| | | || | | | | ||| | || || |||| ||||||||| Sbjct 3360432 ACAATCTAGTTGTCCTACTCTCTGCTTTTCAAATG--CACTTGGAGGCC-GACTGTGAA- 3360377 Query 9311 CGCGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACT 9367 | | |||| | ||||| ||||| | ||||| | ||| |||| |||| ||| |||| Sbjct 3360376 --CAGAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATTGCCTACACGCACT 3360319 Query 9368 GCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||| ||||||||||| |||||||| || || || || | |||||| || |||| Sbjct 3360318 GCTGTGTCAACCCCGTGATCTACGCCTTCGTTGGTGAGAGGTTCCAGAAGCACCT 3360264 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 3451904 GTACTCGGTGGTGTTTGTCGTTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 3451963 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 3451964 GCAGTACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 3452023 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 3452024 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 3452056 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| | || |||||| | Sbjct 3424998 GTACTCAGTGGTGTTTGTCGTTGGCCTCATCGGCAACATCCTAGTGTTGCTGGTCCTCGT 3425057 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||||||||||| | | || |||||| ||| |||||||||||| || ||| Sbjct 3425058 GAAATACAAGAGGCTCAGAAAGGTAACTGACATCTACCTCTTCAACCTGGCCATTTCTGA 3425117 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | | |||| || ||||| |||||| ||| Sbjct 3425118 CCTCATCTTCCTCTTCATGCTGCCCTTCTGGATTGACT 3425155 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 3452620 TGGACCTGGCCATTCAGGTGACGGAGGTGATCGCCTACACTCACTGCTGCGTCAACCCTG 3452679 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| | ||||| ||||| | ||||| Sbjct 3452680 TAATCTATGTCTTTGTCGGCGAGAGGTTCC 3452709 >seq8308 Length=311946 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 88330 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 88271 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || || || |||||||| || |||| Sbjct 88270 TGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCACGTGAACT 88223 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || ||||| |||| ||| Sbjct 88222 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGAGGCGCTGT 88176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| || ||||| |||||||||||||| || || || ||||||| Sbjct 86009 AGCTCCAAGAGAGGGGTGTCTATAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 85950 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | |||||||||| || ||| Sbjct 85949 TAGAAACCTACATGACAATGAAGATG 85924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583363819166400