Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq9234 118 2e-21 seq9072 86.0 9e-12 >seq9234 Length=186048 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | || ||||| || ||||| || | | || | ||| | | Sbjct 10126 AGATGATTAATGGAGAGATGTATCCTCCCACAGTCAAAGATACTCAGGTCGAAATGATCT 10067 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || ||| ||||| ||| | ||| || || |||| | ||| | ||||| || | Sbjct 10066 ACCCACCTCATGTTCCTGAACACTTAAAGTTTGCTGTGGGCCAGGAGGTCTTTGGTCTGG 10007 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||| ||| | ||| |||| |||| || |||||| | || |||||||| || || || | Sbjct 10006 TGCCTGGTCTGATGATGTATGCCACCATTTGGCTGCGGGAACACAACAGAGTGTGTGATG 9947 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||||||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 9946 TGCTGAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 9899 >seq9072 Length=1341007 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 214104 TGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACA 214163 ||||||| || | || || ||||| | ||||||| ||||||||| | ||||||||| Sbjct 719243 TGTTTGGGCTGCTTCCTGGGCTCATGCTCTACGCCACGATCTGGCTGCGTGAGCACAACC 719302 Query 214164 GGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 | || || ||| ||||||| |||||||| ||| |||||||||||| ||||||| Sbjct 719303 GTGTGTGTGACCTGCTGAAGGCTGAGCACCCCACCTGGGGCGACGAACAGCTCTTCCAGA 719362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723186854994240