Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6424 125 1e-23 seq5291 123 3e-23 seq11817 98.7 1e-15 >seq6424 Length=433988 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 17768 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 17709 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 17708 TGAGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 17649 Query 39759 CAAC 39762 | || Sbjct 17648 CTAC 17645 >seq5291 Length=463539 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 20689 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 20748 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 20749 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 20808 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 20809 TTTCTTATACCAT 20821 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| || ||||| ||||| || || || | ||| || || ||||| | Sbjct 44643 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCA 44702 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| | || ||||| || |||| Sbjct 44703 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 44762 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 44763 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 44813 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| ||||||||||| || | || | || || ||||| || || || || Sbjct 26472 GAGCCCTCATAGGTTTCATAAGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 26531 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| |||||| | || || ||| |||| || Sbjct 26532 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCA 26591 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | |||||||| |||||||||| || || |||||||| ||||| || Sbjct 26592 AAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGGG 26651 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | ||||| || Sbjct 26652 CGATGGCGTTTATTCGA 26668 >seq11817 Length=981421 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 476697 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 476756 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || ||||| || || ||||| || Sbjct 476757 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 476816 Query 39761 AC 39762 || Sbjct 476817 AC 476818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||||| | |||||||||||||||| ||||||||||| || |||||||| || || | Sbjct 481662 AAAATCT---CACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 481718 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || ||||||||| || || || | | | | || ||||||| | | ||| |||| Sbjct 481719 TGTGAGAAATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTG 481778 Query 40107 ATATATCTAC 40116 ||| ||| || Sbjct 481779 ATAAATCAAC 481788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686762608634640