Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq14894 109 6e-19
seq4670 91.5 2e-13
seq6424 89.7 6e-13
>seq14894
Length=1360841
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| |||||||||||| ||||| ||| ||| || || || || ||
Sbjct 800274 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 800333
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| |||
Sbjct 800334 CCAATGGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 800393
Query 117425 ATCGT 117429
|| ||
Sbjct 800394 ATAGT 800398
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| ||||| || | ||| || ||||| ||||| || ||||| |||||||||||
Sbjct 800274 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 800333
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| || | ||||| ||||||| ||||| || ||||||||||| ||||||
Sbjct 800334 CCAATGGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 800393
Query 152149 ATCGT 152153
|| ||
Sbjct 800394 ATAGT 800398
>seq4670
Length=477803
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| || ||||||||| | | ||||| || ||
Sbjct 412063 GTGAAGATGTATCGAGGACTAGCAGAGTCTTTGCCACCATGTAACCTGGTACCAAACTGA 412122
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| |
Sbjct 412123 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 412182
Query 117425 ATCGT 117429
|| ||
Sbjct 412183 ATGGT 412187
>seq6424
Length=433988
Score = 89.7 bits (98), Expect = 6e-13
Identities = 100/131 (76%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||||| ||||||||||| ||||| || |||||
Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707
Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890
| ||| || || | | || ||| |||| |||||||||||||| || ||||||||
Sbjct 17706 AGCCAGAATATTGACGCAAAAG-AACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 17648
Query 74891 GACAAGGCGTT 74901
|| | ||||
Sbjct 17647 TACCACACGTT 17637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547099538754800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |