Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14894 109 6e-19 seq4670 91.5 2e-13 seq6424 89.7 6e-13 >seq14894 Length=1360841 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| |||||||||||| ||||| ||| ||| || || || || || Sbjct 800274 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 800333 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| ||| Sbjct 800334 CCAATGGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 800393 Query 117425 ATCGT 117429 || || Sbjct 800394 ATAGT 800398 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 800274 GTGAAAATGTAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 800333 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||||| ||||||| ||||| || ||||||||||| |||||| Sbjct 800334 CCAATGGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 800393 Query 152149 ATCGT 152153 || || Sbjct 800394 ATAGT 800398 >seq4670 Length=477803 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| || ||||||||| | | ||||| || || Sbjct 412063 GTGAAGATGTATCGAGGACTAGCAGAGTCTTTGCCACCATGTAACCTGGTACCAAACTGA 412122 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| | Sbjct 412123 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 412182 Query 117425 ATCGT 117429 || || Sbjct 412183 ATGGT 412187 >seq6424 Length=433988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || ||| |||| |||||||||||||| || |||||||| Sbjct 17706 AGCCAGAATATTGACGCAAAAG-AACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 17648 Query 74891 GACAAGGCGTT 74901 || | |||| Sbjct 17647 TACCACACGTT 17637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547099538754800