Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq13061 156 6e-33 >seq13061 Length=872146 Score = 156 bits (172), Expect = 6e-33 Identities = 567/882 (64%), Gaps = 39/882 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| || || ||| | Sbjct 478524 GAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 478465 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | |||||||||||||||||| || ||||| |||| || | ||||||||| | Sbjct 478464 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATTCACGTGGACACA 478405 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTC-GGCCATCGCCAGGTGCTTCCCTAACGT 13861 || || | || ||| | | || || || ||| || |||||| ||| || Sbjct 478404 AAATCAGAGGAATCGTTTTTG-GCTGCAGCTGTGGGCATGGCATCCTGCTTCAGTAATGT 478346 Query 13862 GGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGA 13921 | ||| | |||| | ||||||||| | |||||||| || || ||||| || Sbjct 478345 CTTTGTCGCCAGTCAGCTGGAGAGCGTGGTGTATGCATCCTGGAGCCGGGTTCAGGCTGA 478286 Query 13922 CCTCAGCTGCATGTCGGACCT-----GGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTC 13976 ||| | ||||||| |||||| ||| | | | | |||| ||||||| | Sbjct 478285 CCTTAACTGCATGCAGGACCTCTCCAGGATGAATGCAG-----ACTGGAAGTACCTGATA 478231 Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 || || ||||| ||||| || || | || ||||||||||| || || || ||| ||| Sbjct 478230 AATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAG 478171 Query 14037 GCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA--------GC 14088 || || ||||| ||| || | ||| | ||||| ||| || | Sbjct 478170 TTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCATAAAAAAGAAAGG 478111 Query 14089 TGCACC--GCATCAGGAAGAGGCACGTGG-TGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || | |||| | |||| |||| ||| ||| || |||||| | Sbjct 478110 TGGAAAAAGCATTATGAAGT----CGTGAATGGAAAGC----------TGACCAACACGG 478065 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 | | |||| | || || || | || ||||| | |||| || || |||| Sbjct 478064 GAACTGACAAAATACATCCACCTCTTGAAACACCTCTCTTTTCAGGAAGTGCCTATTTTG 478005 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||||| |||| | ||||| | ||| ||| || || | | | | ||| Sbjct 478004 TGGTCAGTAGGGAATATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTATGG 477945 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | | ||||| |||||||| |||||| | || |||||||| | ||||| || Sbjct 477944 AGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAGGATCC 477885 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384 || | ||| || | | || | | ||||||||||| || |||||| ||| Sbjct 477884 CCGA-AGTCCCAGGCTCACTGTCCTTGAGCCATAAGTACGACACGTCTGACATGCAGGCG 477826 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | | |||||| || || ||||| |||| || || || | || || |||| ||| Sbjct 477825 ATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCCTAC 477766 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 ||||| |||| |||| ||||||| | | || | ||| | ||||| |||| ||| |||| Sbjct 477765 CCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCCGGTGACTTGAAC 477706 Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 |||||| | |||| | ||| |||| |||||||| |||||| Sbjct 477705 TGGCTGTTGCGCGTGCACCACTTGTTTGCCAACAAATTCGAC 477664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658599003829760