Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq15027 136 3e-27
seq15438 91.5 1e-13
seq12394 87.8 1e-12
>seq15027
Length=2440082
Score = 136 bits (150), Expect = 3e-27
Identities = 125/158 (79%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 2417403 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 2417344
Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067
|| |||||||| ||||||| ||||| | ||| || || ||||| || | ||||||
Sbjct 2417343 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2417284
Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|||||||| | |||||||||||| || || ||||||||
Sbjct 2417283 AACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 2417246
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 29981 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 30040
|||||||||||||| ||||| || || || |||||||| ||||||| ||||| | |||
Sbjct 2417106 TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGG 2417047
Query 30041 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCC 30100
|| || ||||| || | |||||| ||||| || | ||||||||| || || || |||
Sbjct 2417046 CAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCC 2416987
Query 30101 ATGAG 30105
|||||
Sbjct 2416986 ATGAG 2416982
Score = 87.8 bits (96), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || ||||||||||||||||| || || || || || | ||
Sbjct 2414763 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 2414704
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| || | |||| ||||||| |||| | ||||||| ||| |||||||| ||
Sbjct 2414703 CCCTTCAGCTCTGTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGGGACCCGTTGGCATC 2414644
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||| || || || ||||| ||| || || || | ||| ||||| ||
Sbjct 2414643 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 2414596
>seq15438
Length=947670
Score = 91.5 bits (100), Expect = 1e-13
Identities = 177/259 (68%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438
||||||||| || || || || || || || ||||| |||| | || ||||| |
Sbjct 269398 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCCTT 269457
Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498
| ||||| |||||| || || ||||||||||| ||||| |||||||| |||||| ||
Sbjct 269458 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAATT 269517
Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 110558
||| | ||| ||||||||| | |||| | | || | | || || || |
Sbjct 269518 CTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATTTCT 269577
Query 110559 AAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 110617
||| ||| || | ||||| | ||||| || ||||||| |||| ||||| ||
Sbjct 269578 GAGT------GGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGG-GACA 269630
Query 110618 CGGCCACGATACCGTTCAG 110636
| || ||||| | ||| ||
Sbjct 269631 CAGCGACGATGCAGTTTAG 269649
>seq12394
Length=926646
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 217629 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 217688
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 217689 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406226088814392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |