Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq8498 87.8 1e-12
seq11172 86.0 4e-12
>seq8498
Length=279317
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547
||| | |||||| | ||| |||||| ||||||||||||||| || || || | || ||
Sbjct 98930 AAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTACG 98871
Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607
| ||||| ||||| || || ||||| || | | || ||||| || || | ||| ||
Sbjct 98870 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 98811
Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||| || |||||| |||| | ||||| || | || || || | ||
Sbjct 98810 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGT 98751
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || || || | || ||||||||||||||||| |||
Sbjct 98750 GATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 98708
>seq11172
Length=1040880
Score = 86.0 bits (94), Expect = 4e-12
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547
||| | |||||| | ||| |||||| ||||||||||||||| || || || | || |
Sbjct 4331 AAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 4390
Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607
| ||||| ||||| || || | ||| || | | || ||||| || || | ||| ||
Sbjct 4391 TCCATCTTCCAGTTGCTTGCCAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 4450
Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||| || |||||| |||| | ||||| ||| | ||| || || | ||
Sbjct 4451 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTTTCTGAGGGCTCGACCTCGAGAGT 4510
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712
|| || || || || | || ||||| ||||||||||| |||||
Sbjct 4511 GATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCATCTTGAT 4555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314664292231058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |