Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq15027 187 2e-42
>seq15027
Length=2440082
Score = 187 bits (206), Expect = 2e-42
Identities = 138/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||||||||| ||||| ||||||||||||||| ||||||| || |||||||| | ||||
Sbjct 2417237 GATCTCCCTCTCATGGCCCTCCCCCCGTGCCACGCCCTCTGTCAGTTCTACGTGGTGAAT 2417296
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||| | || ||||| |||||||||||||| | || ||||| |||
Sbjct 2417297 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2417356
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || || || |||||||| ||||||||||| ||
Sbjct 2417357 AACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACA 2417397
Score = 187 bits (206), Expect = 2e-42
Identities = 138/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| || || || || |||||||| ||||| || | |||
Sbjct 2417397 TGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 2417338
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| ||
Sbjct 2417337 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGA 2417278
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 2417277 CAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATC 2417237
Score = 158 bits (174), Expect = 1e-33
Identities = 117/137 (85%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | ||||
Sbjct 2416973 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 2417032
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|||||||||||||||||| | || ||||| |||||||||||||| | || ||||| |||
Sbjct 2417033 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2417092
Query 34685 AACATTGCTAGTTACGC 34701
||||| || || || ||
Sbjct 2417093 AACATCGCCAGCTATGC 2417109
Score = 158 bits (174), Expect = 1e-33
Identities = 117/137 (85%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 6644 GCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703
|| || || || |||||||| ||||| || | |||||||||||||| ||||| || | |
Sbjct 2417109 GCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAAC 2417050
Query 6704 TGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763
||||||||||||||||||||| | |||||||| |||||||||| |||||| ||||||||
Sbjct 2417049 TGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGG 2416990
Query 6764 GCCATCAGAGGGAGATC 6780
||||| |||||||||||
Sbjct 2416989 GCCATGAGAGGGAGATC 2416973
Score = 93.3 bits (102), Expect = 4e-14
Identities = 115/155 (74%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| |
Sbjct 2414600 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 2414659
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411
||||||| || |||| | ||| ||| ||| | | | |||| || || ||||| ||
Sbjct 2414660 GAGACTTCCTTGACAGCCTGGGCTTCTCCAACAGAGCTGAAGGG-GATTTAGGCCCAGTT 2414718
Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|| || ||||||||||| || |||||||| || ||
Sbjct 2414719 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 2414753
Score = 93.3 bits (102), Expect = 4e-14
Identities = 115/155 (74%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||||||||| || || || ||||| || || |||| | |
Sbjct 2414753 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC-CCCTTCAGC 2414695
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| ||| ||| ||| | |||| || |||||||| ||||||| || ||||| || ||
Sbjct 2414694 TCTGTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 2414635
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
||| ||| ||| || || ||||| | ||| ||||
Sbjct 2414634 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 2414600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448166998554720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |