Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq15027 187 2e-42 >seq15027 Length=2440082 Score = 187 bits (206), Expect = 2e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| ||||||||||||||| ||||||| || |||||||| | |||| Sbjct 2417237 GATCTCCCTCTCATGGCCCTCCCCCCGTGCCACGCCCTCTGTCAGTTCTACGTGGTGAAT 2417296 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 2417297 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2417356 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| ||||||||||| || Sbjct 2417357 AACATCGCCAGCTATGCCCTGCTCACCTACATGATCGCACA 2417397 Score = 187 bits (206), Expect = 2e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 2417397 TGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 2417338 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| || Sbjct 2417337 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGA 2417278 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||||||||||||| ||||| ||||||||||| Sbjct 2417277 CAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATC 2417237 Score = 158 bits (174), Expect = 1e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 2416973 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 2417032 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 2417033 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2417092 Query 34685 AACATTGCTAGTTACGC 34701 ||||| || || || || Sbjct 2417093 AACATCGCCAGCTATGC 2417109 Score = 158 bits (174), Expect = 1e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 6644 GCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703 || || || || |||||||| ||||| || | |||||||||||||| ||||| || | | Sbjct 2417109 GCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAAC 2417050 Query 6704 TGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 ||||||||||||||||||||| | |||||||| |||||||||| |||||| |||||||| Sbjct 2417049 TGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGG 2416990 Query 6764 GCCATCAGAGGGAGATC 6780 ||||| ||||||||||| Sbjct 2416989 GCCATGAGAGGGAGATC 2416973 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| | Sbjct 2414600 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 2414659 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| || |||| | ||| ||| ||| | | | |||| || || ||||| || Sbjct 2414660 GAGACTTCCTTGACAGCCTGGGCTTCTCCAACAGAGCTGAAGGG-GATTTAGGCCCAGTT 2414718 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 2414719 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 2414753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||| || || |||| | | Sbjct 2414753 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC-CCCTTCAGC 2414695 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| | |||| || |||||||| ||||||| || ||||| || || Sbjct 2414694 TCTGTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 2414635 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| || || ||||| | ||| |||| Sbjct 2414634 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 2414600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448166998554720