Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq15438 235 5e-57 seq8866 178 1e-39 seq5825 113 4e-20 seq8850 95.1 1e-14 >seq15438 Length=947670 Score = 235 bits (260), Expect = 5e-57 Identities = 388/555 (70%), Gaps = 6/555 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || ||| |||| || || || || || ||||| Sbjct 269649 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGAGCATCGGCAAGAACGGGAACCTGCCC 269590 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 | |||||| || | ||||||||| | |||| |||| |||||| | ||||| Sbjct 269589 TAGCCTCCACTCAGAAATGAATTCAGGTATTTCCAAAGAATGACTACAGTGTCTTCAGTA 269530 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || | ||||||| || |||||||| || ||||| ||||| || |||| || Sbjct 269529 GAAGGTAGACAGAATTCGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 269470 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCA 2376 | | ||||| || ||||||| | | | |||||||||||| | || || || || ||| Sbjct 269469 AATCGACCTTTAAAGGACAGAATTAGTATAGTTCTCAGTAGAGAACTCAAGGAACCTCCA 269410 Query 2377 CGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCA 2436 || ||||| ||| |||| |||||| | ||| | || | ||| |||| || ||| Sbjct 269409 AAGGGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAGAACTTATTGAAGATCCA 269350 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 ||||||| | | | || || | |||||||| | || || || ||||| ||| |||| Sbjct 269349 GAATTAACAAATAAAGTAGACGTGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGAA 269290 Query 2497 AGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 ||| ||||| | || | | | || ||| | |||||||| ||||| ||||||| Sbjct 269289 GCCATGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAAGAATTTGA 269231 Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615 | ||||||| | | |||||||||| || || ||||| |||| ||| | |||| || Sbjct 269230 AAGTGATACGTTTTCCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATACCC 269171 Query 2616 AGGTGTT-CCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 ||||||| |||| | || || || ||||| || |||| ||||||||||| |||||| Sbjct 269170 AGGTGTTCCCCTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 269111 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 269110 AAAAGAACAATTAAT 269096 >seq8866 Length=226872 Score = 178 bits (196), Expect = 1e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || ||||||||| | ||||| |||||||||||||| || || |||||||||||||||| Sbjct 77784 CCCCAAGAAGTTTTGATTGTGACATGGCAAAAAGTCAAGGCTGTAAGCCCAGAAAACATG 77725 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || | ||| Sbjct 77724 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGGTCAAC 77665 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| || | || ||||| |||||| | || ||||| ||| Sbjct 77664 ATCACGCAGCTGGGACTCACGAACTCAGCCATCACCTTTTGGAACGCCACCTTGGAGGAT 77605 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| ||||| || | |||||||| ||||| |||||||||| |||||| ||| Sbjct 77604 GAGGCGTGTTACAAATGCCTCTTTAACACCTTTGGCTCTGGGAAGAGCTCAGGAGTAGCC 77545 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 77544 TGCCTCACTCTCTTTG 77529 >seq5825 Length=455940 Score = 113 bits (124), Expect = 4e-20 Identities = 285/423 (67%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| ||||||| ||||| || | ||| | ||| | Sbjct 134863 AAACAGAATTTGGTGATTATGGGTAGAAAGATGTGGTTCA-ACATTCCAG-AGAAGAATC 134806 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | |||| || ||||||| ||| | || ||| |||| | || || || || ||| | Sbjct 134805 GATCTTTCAAAGACAGAATTAATATAATTATCAATAGAGAACTCAAGGAACCTCCATAGG 134746 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | | ||| ||| |||| |||||| | ||| | || | ||| |||| | ||||| || Sbjct 134745 GAGGTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAGAACTTATCAAGCAACCAGCAT 134686 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 ||| | | | | || | | |||| | | || | || ||| | ||| |||| || Sbjct 134685 TAACAAATAAACTAGACATGGTTTGAA-AGCAGGAAGCAGTTCTATATATAAGGAAGCCA 134627 Query 2501 TTACAAGATCTTGCAAAC--AGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558 | | || || || | | |||| | ||| | ||| || ||||| |||||||| | Sbjct 134626 TGAAAAAGTCAGGCCATCTTAGAT--TATTTGTGGCAAAAATCATGCAAGAATTTGAAAG 134569 Query 2559 TGATACATACTTCCCAGAAATTAATCTTACCAAATAC-AAACAACTTACTGAATTTCCAG 2617 |||||||| || ||||||| | || || ||||| |||| || | |||| ||||| Sbjct 134568 TGATACATTTTTTCCAGAAAATGAT-TTGGAAAATAATAAACTTCTCCCAGAATATCCAG 134510 Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677 ||||||| ||| | || || || || | |||| |||||| |||| |||| |||| Sbjct 134509 GTGTTCCTTCT---ATCCAGGAGGAGAAAGTCATTAAGTACAAACTTGAAGTATAAGAAA 134453 Query 2678 aaa 2680 ||| Sbjct 134452 AAA 134450 >seq8850 Length=1385761 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||| ||| | || || || |||||||||||||| || || ||||| ||| Sbjct 514999 GTGGTGGAGGAGCTTTTCAGGGACGGCGTGAACTGGGGGCGCATCGTGGCCTTCTTCGAG 515058 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| ||||| |||||||| | | || | ||||||| |||| | Sbjct 515059 TTCGGCGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTCGTGGACAGC 515118 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 515119 ATCGCGCTGTGGATGACCGA 515138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414390794250664