Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq15027 143 2e-29
seq12394 87.8 1e-12
seq15438 82.4 6e-11
>seq15027
Length=2440082
Score = 143 bits (158), Expect = 2e-29
Identities = 127/159 (80%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779
|||| ||| || |||||||| ||||| || | |||||||||||||| |||||||| ||
Sbjct 2417403 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 2417344
Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839
|| |||||||| || |||| ||||| | |||||| || ||||| || | ||||||
Sbjct 2417343 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2417284
Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|||||||| | ||| |||||||| || ||||||||||||
Sbjct 2417283 AACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAGA 2417245
Score = 111 bits (122), Expect = 1e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 29753 TAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGG 29812
|||||||||||||| |||||||| || || |||||||| || |||| ||||| | ||||
Sbjct 2417106 TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGG 2417047
Query 29813 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCC 29872
|| || ||||| || | |||||| ||||| || | ||| ||||| || || ||||||
Sbjct 2417046 CAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCC 2416987
Query 29873 ATGAGA 29878
||||||
Sbjct 2416986 ATGAGA 2416981
>seq12394
Length=926646
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || || ||||| |||| || | ||||| | | ||||| |||||| || ||
Sbjct 217629 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 217688
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| |||||||| ||||||| ||||| ||||||
Sbjct 217689 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736
>seq15438
Length=947670
Score = 82.4 bits (90), Expect = 6e-11
Identities = 175/259 (68%), Gaps = 8/259 (3%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || || ||||| |||| | | ||||| |
Sbjct 269398 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCCTT 269457
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| ||||| |||||||| |||||| ||
Sbjct 269458 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAATT 269517
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441
||| ||||| | |||||| | |||| | | || | | || || ||
Sbjct 269518 CTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATT--- 269574
Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500
||| | ||| || | ||||| | ||||| || ||||||| |||| ||||| ||
Sbjct 269575 ---TCTGAGTGGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGG-GACA 269630
Query 114501 CTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 269631 CAGCGACGATGCAGTTTAG 269649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406078919359036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |