Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq15027 143 2e-29 seq12394 87.8 1e-12 seq15438 82.4 6e-11 >seq15027 Length=2440082 Score = 143 bits (158), Expect = 2e-29 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | |||||||||||||| |||||||| || Sbjct 2417403 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 2417344 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || |||| ||||| | |||||| || ||||| || | |||||| Sbjct 2417343 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2417284 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 |||||||| | ||| |||||||| || |||||||||||| Sbjct 2417283 AACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAGA 2417245 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 29753 TAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGG 29812 |||||||||||||| |||||||| || || |||||||| || |||| ||||| | |||| Sbjct 2417106 TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGG 2417047 Query 29813 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCC 29872 || || ||||| || | |||||| ||||| || | ||| ||||| || || |||||| Sbjct 2417046 CAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCC 2416987 Query 29873 ATGAGA 29878 |||||| Sbjct 2416986 ATGAGA 2416981 >seq12394 Length=926646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 217629 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 217688 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 217689 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 217736 >seq15438 Length=947670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 175/259 (68%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| | | ||||| | Sbjct 269398 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATACTAATTCTGTCCTT 269457 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| |||||| || Sbjct 269458 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCGAATT 269517 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| ||||| | |||||| | |||| | | || | | || || || Sbjct 269518 CTGTCTACCTTCTACTGAAGACACTGTAGTCATTCTTTGGAAATACCTGAATTCATT--- 269574 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACACG 114500 ||| | ||| || | ||||| | ||||| || ||||||| |||| ||||| || Sbjct 269575 ---TCTGAGTGGAGGCTAGGGCAGGTTCCCGTTCTTGCCGATGCTCATGTTCTGG-GACA 269630 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 269631 CAGCGACGATGCAGTTTAG 269649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406078919359036