Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11295 116 3e-21 seq6424 104 2e-17 seq11817 89.7 4e-13 seq9360 84.2 2e-11 >seq11295 Length=36635 Score = 116 bits (128), Expect = 3e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| || ||||| || | | ||||| |||||||| ||| || | |||||| | ||| Sbjct 33813 AAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCT 33754 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || ||||||| |||||||| || || || || || ||||| | |||| ||| | |||| Sbjct 33753 GGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGAAGATTCTAGA 33694 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| |||| ||||||||||||| Sbjct 33693 GGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 33662 >seq6424 Length=433988 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || |||||||| ||| Sbjct 17706 AGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 17647 Query 4692 AC 4693 || Sbjct 17646 AC 17645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 16935 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 16876 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 16875 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 16832 >seq11817 Length=981421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 481670 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 481729 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 481730 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 481788 >seq9360 Length=194978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 31773 TTAAAACCGATATTCAAAT--TTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 |||||||| |||||||| ||||| ||||| |||||||| ||| || ||||||| Sbjct 138876 TTAAAACCACCATTCAAATAGTTCTT--CCTTCTGGGTGCTATGGAAGAGTAGCTCCCCA 138933 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 | || | || ||| ||| | || ||||| | |||||||||||| || || Sbjct 138934 TTTGGGCTAAGCTACAAAATACTCCACAGATGTGGGAGATGGTGTTATAGATGAAGTTTA 138993 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932 | ||||||| ||||| |||| ||||||||||||| |||||| Sbjct 138994 TGGAGGAAATGTTGGTGTTGTAGTGTTTAATTTTGGCATAGAAAA 139038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426960985339658