Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq11295 116 3e-21
seq6424 104 2e-17
seq11817 89.7 4e-13
seq9360 84.2 2e-11
>seq11295
Length=36635
Score = 116 bits (128), Expect = 3e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834
||||| || ||||| || | | ||||| |||||||| ||| || | |||||| | |||
Sbjct 33813 AAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCT 33754
Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894
|| ||||||| |||||||| || || || || || ||||| | |||| ||| | ||||
Sbjct 33753 GGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCACAGATGAAGATTCTAGA 33694
Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
||||| ||||| |||| |||||||||||||
Sbjct 33693 GGAAATGTTGGTGTTGTCCTGTTTAATTTTGG 33662
>seq6424
Length=433988
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || |||||||| | || ||||| | |||| || ||
Sbjct 17766 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17707
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || || |||||||| |||||||| || |||||||| |||
Sbjct 17706 AGCCAGAATATTGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 17647
Query 4692 AC 4693
||
Sbjct 17646 AC 17645
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 16935 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 16876
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | ||||| || | ||||||||
Sbjct 16875 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 16832
>seq11817
Length=981421
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991
|| || ||||| || || || || ||||||||||||||||| || || | ||||| |||
Sbjct 481670 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 481729
Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
|| |||| || || | ||||| || |||||||| || | ||| || | |||||||||
Sbjct 481730 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 481788
>seq9360
Length=194978
Score = 84.2 bits (92), Expect = 2e-11
Identities = 119/165 (72%), Gaps = 7/165 (4%)
Strand=Plus/Plus
Query 31773 TTAAAACCGATATTCAAAT--TTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830
|||||||| |||||||| ||||| ||||| |||||||| ||| || |||||||
Sbjct 138876 TTAAAACCACCATTCAAATAGTTCTT--CCTTCTGGGTGCTATGGAAGAGTAGCTCCCCA 138933
Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890
| || | || ||| ||| | || ||||| | |||||||||||| || ||
Sbjct 138934 TTTGGGCTAAGCTACAAAATACTCCACAGATGTGGGAGATGGTGTTATAGATGAAGTTTA 138993
Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAA 31932
| ||||||| ||||| |||| ||||||||||||| ||||||
Sbjct 138994 TGGAGGAAATGTTGGTGTTGTAGTGTTTAATTTTGGCATAGAAAA 139038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426960985339658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |