Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq15027 136 3e-27
>seq15027
Length=2440082
Score = 136 bits (150), Expect = 3e-27
Identities = 125/158 (79%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273
|||| ||| || |||||||| ||||| || | |||||||||||||| ||||| || ||
Sbjct 2417403 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCC 2417344
Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333
|| |||||||| ||||||| ||||| | ||| || || ||||| |||| |||||
Sbjct 2417343 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 2417284
Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
|||||||| | |||||||||||| || || ||||||||
Sbjct 2417283 AACTGACAGAGGGCGTGGCACGGGGGGAGGGCCATGAG 2417246
Score = 104 bits (114), Expect = 2e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 27247 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 27306
|||||||||||||| ||||| || || || |||||||| ||||||| ||||| | |||
Sbjct 2417106 TAGCTGGCGATGTTGAAGGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGG 2417047
Query 27307 CACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCC 27366
|| || ||||| |||| ||||| ||||| || | ||||||||| || || || |||
Sbjct 2417046 CAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCC 2416987
Query 27367 ATGAG 27371
|||||
Sbjct 2416986 ATGAG 2416982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369430525639406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |