Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq5291 132 7e-26
seq11295 111 2e-19
seq9783 89.7 7e-13
seq9094 89.7 7e-13
seq6424 86.0 9e-12
>seq5291
Length=463539
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 20689 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 20748
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| |||||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 20749 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 20808
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 20809 TTTCTTATACCAT 20821
Score = 105 bits (116), Expect = 9e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 40342 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 40401
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 40402 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 40461
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| || || ||||||||| ||
Sbjct 40462 ATGTGTTGTGGTCTTTCAGCC 40482
Score = 93.3 bits (102), Expect = 6e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 77355 GATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | ||| ||||||||||| || | || || || || ||||| || ||||||||
Sbjct 26472 GAGCCCTCATAGGTTTCATAAGGGCCATACTCCTT-GGCCAGGTCACAGCTGGCTTCCAA 26530
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
||||| |||||||| ||||| || |||| |||||| | || || || ||| ||
Sbjct 26531 GGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTC 26590
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| || || | |||||||| |||||||| | || || || ||||| || || ||
Sbjct 26591 AAAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGG 26650
Query 77534 TCTATGTCTCTTATTGGA 77551
| ||| | ||||| ||
Sbjct 26651 GCGATGGCGTTTATTCGA 26668
>seq11295
Length=36635
Score = 111 bits (122), Expect = 2e-19
Identities = 181/257 (70%), Gaps = 8/257 (3%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| || || |||||| ||| || | ||| ||||||
Sbjct 33527 TCCAGTGGAACCAAACCCTCCTGAACGCCT--TTCAGTGTCATGTAAAC-TTGAACTTCC 33583
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| |||| | | || || || || |||| ||||||| | ||
Sbjct 33584 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 33643
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | || |||| | |||||| |||||
Sbjct 33644 ACTTCAAACGTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTAGAATCT 33703
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||| | || || |||| ||||| || |||| | || ||||| | ||||
Sbjct 33704 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 33763
Query 46111 GCTATTCTTCCATAACA 46127
|| | ||||||||| ||
Sbjct 33764 GCCACTCTTCCATAGCA 33780
>seq9783
Length=1241856
Score = 89.7 bits (98), Expect = 7e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935
||||||||| ||||| || | || |||||||| ||||| | ||| || ||||
Sbjct 1044677 TCCAGTGGAACCAAAATCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 1044736
Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995
| ||||||||| |||| ||| | | || || || || || ||||||| | || |
Sbjct 1044737 TATTTCAGGATAAAATATCTGTTCACAAATGAGCTGTGCAGTTTGATCACCCTTTTTGAC 1044796
Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055
|||||| | ||||| ||| ||| || | || ||||| | |||||||||||| |
Sbjct 1044797 TTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTATAATCTGC 1044856
Query 46056 ATCTATTACTCCCCCTCCCACA 46077
| |||| || || ||||||||
Sbjct 1044857 ACCTATGACACCAGCTCCCACA 1044878
>seq9094
Length=1721495
Score = 89.7 bits (98), Expect = 7e-13
Identities = 136/191 (71%), Gaps = 7/191 (4%)
Strand=Plus/Plus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
|||||| || ||||| ||| ||| | | |||||| | |||||| || ||| ||||||
Sbjct 648099 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCACTGTCATCTAAAGCTTGAACTTCC 648156
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| | || | | || ||||| || |||| ||||||| | ||
Sbjct 648157 TCAATTTCTGGTTAAAATATCCATTCACAAATAAGTTGTGCAATTCAATCACCCTTTTTG 648216
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| | | | ||||| || | || |||||||||||
Sbjct 648217 ACTTCAAACTTTTCTTTGCCAAAACTAAACAGAACAACACTAACAT---CTCTATAATCT 648273
Query 46054 TCATCTATTAC 46064
|||||||| ||
Sbjct 648274 TCATCTATGAC 648284
>seq6424
Length=433988
Score = 86.0 bits (94), Expect = 9e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||| || || || | ||||| || || ||||| || ||
Sbjct 19306 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 19247
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| ||| |||||||||||||| |||||||||||
Sbjct 19246 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 19212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694520957112640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |