Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202 017-04-20] 17,026 sequences; 2,380,505,687 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5291 132 7e-26 seq11295 111 2e-19 seq9783 89.7 7e-13 seq9094 89.7 7e-13 seq6424 86.0 9e-12 >seq5291 Length=463539 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 20689 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 20748 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 20749 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 20808 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 20809 TTTCTTATACCAT 20821 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 40342 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 40401 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 40402 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 40461 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 40462 ATGTGTTGTGGTCTTTCAGCC 40482 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCC-TTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| ||||||||||| || | || || || || ||||| || |||||||| Sbjct 26472 GAGCCCTCATAGGTTTCATAAGGGCCATACTCCTT-GGCCAGGTCACAGCTGGCTTCCAA 26530 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| ||||| || |||| |||||| | || || || ||| || Sbjct 26531 GGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTC 26590 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | |||||||| |||||||| | || || || ||||| || || || Sbjct 26591 AAAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCGATGGG 26650 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 26651 GCGATGGCGTTTATTCGA 26668 >seq11295 Length=36635 Score = 111 bits (122), Expect = 2e-19 Identities = 181/257 (70%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| || || |||||| ||| || | ||| |||||| Sbjct 33527 TCCAGTGGAACCAAACCCTCCTGAACGCCT--TTCAGTGTCATGTAAAC-TTGAACTTCC 33583 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | || || || || |||| ||||||| | || Sbjct 33584 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 33643 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||| ||||| Sbjct 33644 ACTTCAAACGTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTAGAATCT 33703 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||| | || || |||| ||||| || |||| | || ||||| | |||| Sbjct 33704 TCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 33763 Query 46111 GCTATTCTTCCATAACA 46127 || | ||||||||| || Sbjct 33764 GCCACTCTTCCATAGCA 33780 >seq9783 Length=1241856 Score = 89.7 bits (98), Expect = 7e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| || | || |||||||| ||||| | ||| || |||| Sbjct 1044677 TCCAGTGGAACCAAAATCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 1044736 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | ||||||||| |||| ||| | | || || || || || ||||||| | || | Sbjct 1044737 TATTTCAGGATAAAATATCTGTTCACAAATGAGCTGTGCAGTTTGATCACCCTTTTTGAC 1044796 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| || | || ||||| | |||||||||||| | Sbjct 1044797 TTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTATAATCTGC 1044856 Query 46056 ATCTATTACTCCCCCTCCCACA 46077 | |||| || || |||||||| Sbjct 1044857 ACCTATGACACCAGCTCCCACA 1044878 >seq9094 Length=1721495 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/191 (71%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || ||||| ||| ||| | | |||||| | |||||| || ||| |||||| Sbjct 648099 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCACTGTCATCTAAAGCTTGAACTTCC 648156 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || ||||| || |||| ||||||| | || Sbjct 648157 TCAATTTCTGGTTAAAATATCCATTCACAAATAAGTTGTGCAATTCAATCACCCTTTTTG 648216 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| | | | ||||| || | || ||||||||||| Sbjct 648217 ACTTCAAACTTTTCTTTGCCAAAACTAAACAGAACAACACTAACAT---CTCTATAATCT 648273 Query 46054 TCATCTATTAC 46064 |||||||| || Sbjct 648274 TCATCTATGAC 648284 >seq6424 Length=433988 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 19306 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 19247 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 19246 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 19212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694520957112640