Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Odocoileus_20virginianus_20texanus_20[refseq_20GCF_5F002102435.1_202
017-04-20] 17,026 sequences; 2,380,505,687 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq5291 136 6e-27
seq11295 89.7 7e-13
seq6424 86.0 9e-12
seq11817 84.2 3e-11
>seq5291
Length=463539
Score = 136 bits (150), Expect = 6e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 20689 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 20748
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| |||||||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 20749 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 20808
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 20809 TTTCTTATACCAT 20821
Score = 105 bits (116), Expect = 1e-17
Identities = 123/166 (74%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| |||| ||| || ||||| ||||| | || || ||||| || || || || || ||
Sbjct 44648 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGATG 44707
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | ||||| |||| || ||| | || || || |||||||| | |
Sbjct 44708 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCAGT 44767
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | |||||| || || | |||| ||||| || ||||||||||
Sbjct 44768 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 44813
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| |||| || ||||| ||||| || ||||| || |||||||| || |||
Sbjct 40342 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 40401
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||||||||| | || || ||||| || ||||| || |||| || | |||||||
Sbjct 40402 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 40461
Query 77114 ATATGCTGAGGTCGTTC 77130
|| || || |||| |||
Sbjct 40462 ATGTGTTGTGGTCTTTC 40478
>seq11295
Length=36635
Score = 89.7 bits (98), Expect = 7e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470
||| |||||||||| || || ||| |||| |||| | | || || || || |||| |||
Sbjct 33574 TTGAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATC 33633
Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530
||| | || | || ||| || ||||| ||| ||| | || | || |||| || ||
Sbjct 33634 ACCCTTTTTGACTTCAAACGTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCC 33693
Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT 44569
||| ||||||||||| | || ||| |||| ||||| ||
Sbjct 33694 TCTAGAATCTTCATCTGTGACACCAGCTCCTACATCTAT 33732
>seq6424
Length=433988
Score = 86.0 bits (94), Expect = 9e-12
Identities = 102/138 (74%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340
||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| |
Sbjct 19349 TTAGAAGTCGGCATCCAACGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 19290
Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400
|| || || ||||| | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 19289 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 19230
Query 46401 CATAAAATCAAACGGATT 46418
|||||| ||||| |||||
Sbjct 19229 CATAAAGTCAAATGGATT 19212
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || || || || | |||||||||||||| ||||| |||||||| || ||
Sbjct 16936 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 16877
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|| || || || || ||||| | ||||| |||||||| || |||
Sbjct 16876 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 16831
>seq11817
Length=981421
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| || ||| |
Sbjct 486959 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATGTCAGG 487018
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| ||||| || |||||||
Sbjct 487019 GTACTGGATTGGAAAGATGACAAATC 487044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712782669736320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |